Non-Coding RNA Search

rfhi4016b_b11.y1

Sequence:


               
               CCGGCGCCGGCCTCTGTTTCCTGCTGCCCAGCCTCTTCCACCTGCGCCTGCTCTGGCGCA
AGCTGCTGTGGCACCAAGTCTTCTTCGATGTCGCCATCTTCGTCATCGGCGGCATCTGCA
GCGTGTCCGGCTTCGTGCATTCGCTGGAGGGCCTCATTGAGGCCTACCGAACCAACGCGG
AGGACTAGTGCTCGAGGGCGAGCCCCGGCCGCACTCCAGTGCTCTGCCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCGCCGGCCTCTGTTTCCTGCTGCCCAGCCTCTTCCACCTGCGCCTGCTCTGGCGCA
AGCTGCTGTGGCACCAAGTCTTCTTCGATGTCGCCATCTTCGTCATCGGCGGCATCTGCA
GCGTGTCCGGCTTCGTGCATTCGCTGGAGGGCCTCATTGAGGCCTACCGAACCAACGCGG
AGGACTAGTGCTCGAGGGCGAGCCCCGGCCGCACTCCAGTGCTCTGCCCCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-121, + strand, RNAz p=0.996314

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, + strand, RNAz p=0.996314

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               3-121, AGENCOURT_14413666 NIH_MGC_180 Homo sapiens cDNA clone (gb|CD557601.1|), 
blast E-value=0, identity=97.48% 
               

               
               3-121, UI-M-HW0-crq-c-04-0-UI.r1 NIH_BMAP_HW0 Mus musculus cDNA clone 
(gb|CO429271.1|), blast E-value=0, identity=95.8% 
               

               
               3-121, ja01e06.y1 Mouse Whole eye, equalized (gb|CX733817.1|), blast E-value=0, 
identity=95.8% 
               

               
               3-121, 1160118 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN279138.1|), 
blast E-value=0, identity=97.48% 
               

               
               3-121, 1161654 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN280529.1|), 
blast E-value=0, identity=97.48% 
               

               
               3-121, LB02815.CR_J16 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV909805.1|), 
blast E-value=0, identity=97.48%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               3-121, AGENCOURT_14413666 NIH_MGC_180 Homo sapiens cDNA clone (gb|CD557601.1|), 
blast E-value=0, identity=97.48% 
               

               
               3-121, UI-M-HW0-crq-c-04-0-UI.r1 NIH_BMAP_HW0 Mus musculus cDNA clone 
(gb|CO429271.1|), blast E-value=0, identity=95.8% 
               

               
               3-121, ja01e06.y1 Mouse Whole eye, equalized (gb|CX733817.1|), blast E-value=0, 
identity=95.8% 
               

               
               3-121, 1160118 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN279138.1|), 
blast E-value=0, identity=97.48% 
               

               
               3-121, 1161654 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN280529.1|), 
blast E-value=0, identity=97.48% 
               

               
               3-121, LB02815.CR_J16 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV909805.1|), 
blast E-value=0, identity=97.48%

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               3-232, gnl|bosTau2|chr20 (23010930-23011161)
               

               
               3-232, gnl|canFam2|chr24 (30116593-30116897)
               

               
               3-232, gnl|danRer3|chrNA (52620258-52619953)
               

               
               3-232, gnl|dasNov1|scaffold_10865 (49184-48879)
               

               
               3-232, gnl|fr1|chrUn (44579188-44578884)
               

               
               3-232, gnl|galGal2|chr20 (3484290-3483986)
               

               
               3-232, gnl|hg17|chr20 (36790392-36790696)
               

               
               3-232, gnl|Hg17|chr20 (36790511-36790742)
               

               
               3-232, gnl|mm7|chr2 (158355590-158355894)
               

               
               3-232, gnl|Mm7|chr2 (158355709-158355939)
               

               
               3-232, gnl|monDom2|scaffold_6 (3104784-3105088)
               

               
               3-232, gnl|oryCun1|scaffold_214449 (141134-140830)
               

               
               3-232, gnl|panTro1|chr21 (39171073-39171377)
               

               
               3-232, gnl|rheMac2|chr10 (25724883-25724579)
               

               
               3-232, gnl|rn3|chr3 (149251754-149252058)
               

               
               3-232, gnl|tetNig1|chr11 (2992603-2992907)
               

               
               3-232, gnl|xenTro1|scaffold_35 (475921-475617)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-232, gnl|bosTau2|chr20 (23010930-23011161)
               

               
               3-232, gnl|canFam2|chr24 (30116593-30116897)
               

               
               3-232, gnl|danRer3|chrNA (52620258-52619953)
               

               
               3-232, gnl|dasNov1|scaffold_10865 (49184-48879)
               

               
               3-232, gnl|fr1|chrUn (44579188-44578884)
               

               
               3-232, gnl|galGal2|chr20 (3484290-3483986)
               

               
               3-232, gnl|hg17|chr20 (36790392-36790696)
               

               
               3-232, gnl|Hg17|chr20 (36790511-36790742)
               

               
               3-232, gnl|mm7|chr2 (158355590-158355894)
               

               
               3-232, gnl|Mm7|chr2 (158355709-158355939)
               

               
               3-232, gnl|monDom2|scaffold_6 (3104784-3105088)
               

               
               3-232, gnl|oryCun1|scaffold_214449 (141134-140830)
               

               
               3-232, gnl|panTro1|chr21 (39171073-39171377)
               

               
               3-232, gnl|rheMac2|chr10 (25724883-25724579)
               

               
               3-232, gnl|rn3|chr3 (149251754-149252058)
               

               
               3-232, gnl|tetNig1|chr11 (2992603-2992907)
               

               
               3-232, gnl|xenTro1|scaffold_35 (475921-475617)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	3-121, AGENCOURT_14413666 NIH_MGC_180 Homo sapiens cDNA clone (gb\|CD557601.1\|), blast E-value=0, identity=97.48%
	3-121, UI-M-HW0-crq-c-04-0-UI.r1 NIH_BMAP_HW0 Mus musculus cDNA clone (gb\|CO429271.1\|), blast E-value=0, identity=95.8%
	3-121, ja01e06.y1 Mouse Whole eye, equalized (gb\|CX733817.1\|), blast E-value=0, identity=95.8%
	3-121, 1160118 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN279138.1\|), blast E-value=0, identity=97.48%
	3-121, 1161654 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN280529.1\|), blast E-value=0, identity=97.48%
	3-121, LB02815.CR_J16 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV909805.1\|), blast E-value=0, identity=97.48%

	3-232, gnl\|bosTau2\|chr20 (23010930-23011161)
	3-232, gnl\|canFam2\|chr24 (30116593-30116897)
	3-232, gnl\|danRer3\|chrNA (52620258-52619953)
	3-232, gnl\|dasNov1\|scaffold_10865 (49184-48879)
	3-232, gnl\|fr1\|chrUn (44579188-44578884)
	3-232, gnl\|galGal2\|chr20 (3484290-3483986)
	3-232, gnl\|hg17\|chr20 (36790392-36790696)
	3-232, gnl\|Hg17\|chr20 (36790511-36790742)
	3-232, gnl\|mm7\|chr2 (158355590-158355894)
	3-232, gnl\|Mm7\|chr2 (158355709-158355939)
	3-232, gnl\|monDom2\|scaffold_6 (3104784-3105088)
	3-232, gnl\|oryCun1\|scaffold_214449 (141134-140830)
	3-232, gnl\|panTro1\|chr21 (39171073-39171377)
	3-232, gnl\|rheMac2\|chr10 (25724883-25724579)
	3-232, gnl\|rn3\|chr3 (149251754-149252058)
	3-232, gnl\|tetNig1\|chr11 (2992603-2992907)
	3-232, gnl\|xenTro1\|scaffold_35 (475921-475617)