Non-Coding RNA Search

rfhi4016b_g21.y1

Sequence:


               
               ACTTTTGCTGGGCTGACCAAGATGGTTGCTAACCAACTAGACGGCCACATGAACGGGCAG
ATGGTGGAGCATCTGATGGACTCGGTGATGAAGCTGTGTCTCATTATTGCCAAGTCCTGT
GACTCTCCCTTGGGAGAACTGGGGGATGACAAGTCTGGGGATGCCAGCAGGCCTGTGTCC
GCCTTCCCAGAGAATCTGTATGAGTGTTTACCAACCAAGGGCACAGGGACAGCAGAGACG
TTGCTGCAGAACGCCTATCAAGCCATCCACAACGAACTGAGAGGCATGTCAGGACAGCCC
CTGGAAGGGTGCACGGCACCCAAGGTGATTGTCAGCAACCACAACCTCACCGATACGGTT
CAGAACAAGCAACTGCAAGCCGTACTTCAGTGGGTAGCCGCCTCAGAGCTCAATGTCCCT
ATTTTGTACTTTGCTGGTGACGATGAAGGAATCCAGGAGAAGGTTCACTGAGCTTCTTGA
ATTTGTCCATCTGTCTTTTGGCAAATTGGGGAATCTTTCATCTATTATTTCTTCAAGTTG
TTTCTGAACCAGCCTTTTTCTCCTTTCCTTCTGGGATTCTGGAGACATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTTGCTGGGCTGACCAAGATGGTTGCTAACCAACTAGACGGCCACATGAACGGGCAG
ATGGTGGAGCATCTGATGGACTCGGTGATGAAGCTGTGTCTCATTATTGCCAAGTCCTGT
GACTCTCCCTTGGGAGAACTGGGGGATGACAAGTCTGGGGATGCCAGCAGGCCTGTGTCC
GCCTTCCCAGAGAATCTGTATGAGTGTTTACCAACCAAGGGCACAGGGACAGCAGAGACG
TTGCTGCAGAACGCCTATCAAGCCATCCACAACGAACTGAGAGGCATGTCAGGACAGCCC
CTGGAAGGGTGCACGGCACCCAAGGTGATTGTCAGCAACCACAACCTCACCGATACGGTT
CAGAACAAGCAACTGCAAGCCGTACTTCAGTGGGTAGCCGCCTCAGAGCTCAATGTCCCT
ATTTTGTACTTTGCTGGTGACGATGAAGGAATCCAGGAGAAGGTTCACTGAGCTTCTTGA
ATTTGTCCATCTGTCTTTTGGCAAATTGGGGAATCTTTCATCTATTATTTCTTCAAGTTG
TTTCTGAACCAGCCTTTTTCTCCTTTCCTTCTGGGATTCTGGAGACATAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-160, - strand, RNAz p=0.985188

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-160, - strand, RNAz p=0.985188

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-464, gnl|bosTau2|chr5 (63592818-63592356)
               

               
               2-464, gnl|canFam2|chr27 (43266660-43266266)
               

               
               2-464, gnl|dasNov1|scaffold_27357 (642-248)
               

               
               2-464, gnl|echTel1|scaffold_289686 (23070-23463)
               

               
               2-464, gnl|hg17|chr12 (4605915-4606308)
               

               
               2-464, gnl|Hg17|chr12 (4606383-4605921)
               

               
               2-464, gnl|mm7|chr6 (126892306-126891913)
               

               
               2-464, gnl|Mm7|chr6 (126891836-126892298)
               

               
               2-464, gnl|monDom2|scaffold_31 (20989618-20989227)
               

               
               2-464, gnl|oryCun1|scaffold_180859 (13712-13322)
               

               
               2-464, gnl|panTro1|chr10 (4871423-4871831)
               

               
               2-464, gnl|rheMac2|chr11 (4724164-4724572)
               

               
               2-464, gnl|rn3|chr4 (163500110-163499717)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-464, gnl|bosTau2|chr5 (63592818-63592356)
               

               
               2-464, gnl|canFam2|chr27 (43266660-43266266)
               

               
               2-464, gnl|dasNov1|scaffold_27357 (642-248)
               

               
               2-464, gnl|echTel1|scaffold_289686 (23070-23463)
               

               
               2-464, gnl|hg17|chr12 (4605915-4606308)
               

               
               2-464, gnl|Hg17|chr12 (4606383-4605921)
               

               
               2-464, gnl|mm7|chr6 (126892306-126891913)
               

               
               2-464, gnl|Mm7|chr6 (126891836-126892298)
               

               
               2-464, gnl|monDom2|scaffold_31 (20989618-20989227)
               

               
               2-464, gnl|oryCun1|scaffold_180859 (13712-13322)
               

               
               2-464, gnl|panTro1|chr10 (4871423-4871831)
               

               
               2-464, gnl|rheMac2|chr11 (4724164-4724572)
               

               
               2-464, gnl|rn3|chr4 (163500110-163499717)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	2-464, gnl\|bosTau2\|chr5 (63592818-63592356)
	2-464, gnl\|canFam2\|chr27 (43266660-43266266)
	2-464, gnl\|dasNov1\|scaffold_27357 (642-248)
	2-464, gnl\|echTel1\|scaffold_289686 (23070-23463)
	2-464, gnl\|hg17\|chr12 (4605915-4606308)
	2-464, gnl\|Hg17\|chr12 (4606383-4605921)
	2-464, gnl\|mm7\|chr6 (126892306-126891913)
	2-464, gnl\|Mm7\|chr6 (126891836-126892298)
	2-464, gnl\|monDom2\|scaffold_31 (20989618-20989227)
	2-464, gnl\|oryCun1\|scaffold_180859 (13712-13322)
	2-464, gnl\|panTro1\|chr10 (4871423-4871831)
	2-464, gnl\|rheMac2\|chr11 (4724164-4724572)
	2-464, gnl\|rn3\|chr4 (163500110-163499717)