Non-Coding RNA Search

rfhi4023b_o17.y1

Sequence:


               
               CCTGGCCCCGAAGACTGGAGACCTCATTCCTGGGACTACGGGTGGTCTTTCTGGATGGAG
AAGGGGGATGGGAACGAGGAAGAGGACCTCCGCTTGGATTGTCGCCACGAGAGATACCCC
GCCCGACACCAGCCACACACGGGAGACTCCTGGCCCCGCAGTTCTGCACAGGAGGCATTG
GAGCTGAGGCGCCAGTGCTGGGTCCTGGGGCACTGGGTGTGACAGTGACCCAGCCGGGCT
CCAGTCCTCAGGCCGTCATGGGCACCAGCCCCCTGCCGCCAGACCGCTAGTCTGGCGCTT
TCAGAAACCTGGTCTGTGTGCTGCGAACTCAGCCAGCCTGCGTGGAGGACACGTGGCCCG
CCCTGCCCCCCACGGCCTGGGTCTCAGGCTGCTGGAATCGGGGCCTGGGTGGCTCGAGGG
ATGTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCCCCGAAGACTGGAGACCTCATTCCTGGGACTACGGGTGGTCTTTCTGGATGGAG
AAGGGGGATGGGAACGAGGAAGAGGACCTCCGCTTGGATTGTCGCCACGAGAGATACCCC
GCCCGACACCAGCCACACACGGGAGACTCCTGGCCCCGCAGTTCTGCACAGGAGGCATTG
GAGCTGAGGCGCCAGTGCTGGGTCCTGGGGCACTGGGTGTGACAGTGACCCAGCCGGGCT
CCAGTCCTCAGGCCGTCATGGGCACCAGCCCCCTGCCGCCAGACCGCTAGTCTGGCGCTT
TCAGAAACCTGGTCTGTGTGCTGCGAACTCAGCCAGCCTGCGTGGAGGACACGTGGCCCG
CCCTGCCCCCCACGGCCTGGGTCTCAGGCTGCTGGAATCGGGGCCTGGGTGGCTCGAGGG
ATGTGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               288-395, - strand, RNAz p=0.545673

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               288-395, - strand, RNAz p=0.545673

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               350-422, - strand, RNAmicro p=0.994156
               

               
               356-416, + strand, RNAmicro p=0.97242

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               350-422, - strand, RNAmicro p=0.994156
               

               
               356-416, + strand, RNAmicro p=0.97242

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               125-420, gnl|bosTau2|chr25 (25206925-25206633)
               

               
               125-420, gnl|canFam2|chr6 (21915156-21914634)
               

               
               125-420, gnl|echTel1|scaffold_322656 (41931-41491)
               

               
               125-420, gnl|fr1|chrUn (302099189-302098675)
               

               
               125-420, gnl|hg17|chr16 (27709767-27710312)
               

               
               125-420, gnl|Hg17|chr16 (27710289-27709982)
               

               
               125-420, gnl|mm7|chr7 (121977309-121977818)
               

               
               125-420, gnl|Mm7|chr7 (121977796-121977526)
               

               
               125-420, gnl|oryCun1|scaffold_124182 (633-1117)
               

               
               125-420, gnl|panTro1|chr18 (28405931-28406476)
               

               
               125-420, gnl|rheMac2|chr20 (26241847-26242395)
               

               
               125-420, gnl|rn3|chr1 (185091517-185092025)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-420, gnl|bosTau2|chr25 (25206925-25206633)
               

               
               125-420, gnl|canFam2|chr6 (21915156-21914634)
               

               
               125-420, gnl|echTel1|scaffold_322656 (41931-41491)
               

               
               125-420, gnl|fr1|chrUn (302099189-302098675)
               

               
               125-420, gnl|hg17|chr16 (27709767-27710312)
               

               
               125-420, gnl|Hg17|chr16 (27710289-27709982)
               

               
               125-420, gnl|mm7|chr7 (121977309-121977818)
               

               
               125-420, gnl|Mm7|chr7 (121977796-121977526)
               

               
               125-420, gnl|oryCun1|scaffold_124182 (633-1117)
               

               
               125-420, gnl|panTro1|chr18 (28405931-28406476)
               

               
               125-420, gnl|rheMac2|chr20 (26241847-26242395)
               

               
               125-420, gnl|rn3|chr1 (185091517-185092025)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	350-422, - strand, RNAmicro p=0.994156
	356-416, + strand, RNAmicro p=0.97242

	125-420, gnl\|bosTau2\|chr25 (25206925-25206633)
	125-420, gnl\|canFam2\|chr6 (21915156-21914634)
	125-420, gnl\|echTel1\|scaffold_322656 (41931-41491)
	125-420, gnl\|fr1\|chrUn (302099189-302098675)
	125-420, gnl\|hg17\|chr16 (27709767-27710312)
	125-420, gnl\|Hg17\|chr16 (27710289-27709982)
	125-420, gnl\|mm7\|chr7 (121977309-121977818)
	125-420, gnl\|Mm7\|chr7 (121977796-121977526)
	125-420, gnl\|oryCun1\|scaffold_124182 (633-1117)
	125-420, gnl\|panTro1\|chr18 (28405931-28406476)
	125-420, gnl\|rheMac2\|chr20 (26241847-26242395)
	125-420, gnl\|rn3\|chr1 (185091517-185092025)