Non-Coding RNA Search

rfhi4025b_k21.y1

Sequence:


               
               AAGAAATTGGGTCTTTCTTATTTCATGCTATTAACAAGCCAAATGCGCCTGTCTGGCTAA
TACTCAATGAAGCTGGACTTTACTGGAGAGCGGTAGGAAACAGCACTTTTGCTATTGCTT
GTCTCCAGAGGGCTTTGAATTTGGCTCCACTTCAGTACCAGGATGTTCCTCTTGTGAACT
TGGCCAACCTTTTGATTCACTATGGCCTTCACCTTGATGCTACTAAACTGCTGCTTCAAG
CTTTGGCTGTCAATAGCTCTGAGCCCCTGACGTTTTTGAGCCTGGGAAATGCGTACCTTG
CTCTGAAGAATATCAGTGGGGCACTTGAGGCCTTTAGACAGGCTTTAAAATTAACTACAA
AATGCCCAGAGTGTGAAAACAACCTGAAGTTGATTCGCTGTATGCAGTTTTATCCTTTTC
TGTACAACATCACTTCTTCTGTTTGCAGTGGTAATTGTCATGAGAAAACCCTGGACAGCA
ACCATGACAAACAGAAATATTTTGACAACTCACAGTCACTGGATGCCGCTGAAGAAGAGC
CCTCTGAGACAGGAACAGAGGAAGACCCTGTGCTTTCTGTTGAGAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAATTGGGTCTTTCTTATTTCATGCTATTAACAAGCCAAATGCGCCTGTCTGGCTAA
TACTCAATGAAGCTGGACTTTACTGGAGAGCGGTAGGAAACAGCACTTTTGCTATTGCTT
GTCTCCAGAGGGCTTTGAATTTGGCTCCACTTCAGTACCAGGATGTTCCTCTTGTGAACT
TGGCCAACCTTTTGATTCACTATGGCCTTCACCTTGATGCTACTAAACTGCTGCTTCAAG
CTTTGGCTGTCAATAGCTCTGAGCCCCTGACGTTTTTGAGCCTGGGAAATGCGTACCTTG
CTCTGAAGAATATCAGTGGGGCACTTGAGGCCTTTAGACAGGCTTTAAAATTAACTACAA
AATGCCCAGAGTGTGAAAACAACCTGAAGTTGATTCGCTGTATGCAGTTTTATCCTTTTC
TGTACAACATCACTTCTTCTGTTTGCAGTGGTAATTGTCATGAGAAAACCCTGGACAGCA
ACCATGACAAACAGAAATATTTTGACAACTCACAGTCACTGGATGCCGCTGAAGAAGAGC
CCTCTGAGACAGGAACAGAGGAAGACCCTGTGCTTTCTGTTGAGAATTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               37-155, + strand, RNAz p=0.758595

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-155, + strand, RNAz p=0.758595

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC017238, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC017238, +

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               37-263, gnl|bosTau2|chr15 (51549618-51549844)
               

               
               37-263, gnl|canFam2|chr18 (29294988-29294732)
               

               
               37-263, gnl|danRer3|chr11 (29567844-29568082)
               

               
               37-263, gnl|dasNov1|scaffold_70708 (7349-7612)
               

               
               37-263, gnl|fr1|chrUn (33463035-33462789)
               

               
               37-263, gnl|galGal2|chr5 (18690137-18689887)
               

               
               37-263, gnl|hg17|chr11 (43385462-43385719)
               

               
               37-263, gnl|Hg17|chr11 (43385477-43385703)
               

               
               37-263, gnl|mm7|chr2 (94213297-94213042)
               

               
               37-263, gnl|Mm7|chr2 (94213282-94213056)
               

               
               37-263, gnl|monDom2|scaffold_33 (8750543-8750804)
               

               
               37-263, gnl|oryCun1|scaffold_164611 (31169-31427)
               

               
               37-263, gnl|panTro1|chr9 (43879984-43880241)
               

               
               37-263, gnl|rheMac2|chr14 (28680304-28680047)
               

               
               37-263, gnl|rn3|chr3 (78671644-78671392)
               

               
               37-263, gnl|xenTro1|scaffold_266 (91365-91601)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-263, gnl|bosTau2|chr15 (51549618-51549844)
               

               
               37-263, gnl|canFam2|chr18 (29294988-29294732)
               

               
               37-263, gnl|danRer3|chr11 (29567844-29568082)
               

               
               37-263, gnl|dasNov1|scaffold_70708 (7349-7612)
               

               
               37-263, gnl|fr1|chrUn (33463035-33462789)
               

               
               37-263, gnl|galGal2|chr5 (18690137-18689887)
               

               
               37-263, gnl|hg17|chr11 (43385462-43385719)
               

               
               37-263, gnl|Hg17|chr11 (43385477-43385703)
               

               
               37-263, gnl|mm7|chr2 (94213297-94213042)
               

               
               37-263, gnl|Mm7|chr2 (94213282-94213056)
               

               
               37-263, gnl|monDom2|scaffold_33 (8750543-8750804)
               

               
               37-263, gnl|oryCun1|scaffold_164611 (31169-31427)
               

               
               37-263, gnl|panTro1|chr9 (43879984-43880241)
               

               
               37-263, gnl|rheMac2|chr14 (28680304-28680047)
               

               
               37-263, gnl|rn3|chr3 (78671644-78671392)
               

               
               37-263, gnl|xenTro1|scaffold_266 (91365-91601)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	37-263, gnl\|bosTau2\|chr15 (51549618-51549844)
	37-263, gnl\|canFam2\|chr18 (29294988-29294732)
	37-263, gnl\|danRer3\|chr11 (29567844-29568082)
	37-263, gnl\|dasNov1\|scaffold_70708 (7349-7612)
	37-263, gnl\|fr1\|chrUn (33463035-33462789)
	37-263, gnl\|galGal2\|chr5 (18690137-18689887)
	37-263, gnl\|hg17\|chr11 (43385462-43385719)
	37-263, gnl\|Hg17\|chr11 (43385477-43385703)
	37-263, gnl\|mm7\|chr2 (94213297-94213042)
	37-263, gnl\|Mm7\|chr2 (94213282-94213056)
	37-263, gnl\|monDom2\|scaffold_33 (8750543-8750804)
	37-263, gnl\|oryCun1\|scaffold_164611 (31169-31427)
	37-263, gnl\|panTro1\|chr9 (43879984-43880241)
	37-263, gnl\|rheMac2\|chr14 (28680304-28680047)
	37-263, gnl\|rn3\|chr3 (78671644-78671392)
	37-263, gnl\|xenTro1\|scaffold_266 (91365-91601)