Non-Coding RNA Search

rfhi4027b_c1.y1

Sequence:


               
               GGCTCTGCCTCGAAAGTGGAGAAGGTGGACGACTGGAATGATGTGGAAGCTGAGGGTGAC
CCTCCTAAACCTTGGGTTAGAAAAGCTGGAGCTAAAATTCGCTCCAGGAGAACTAAGCAG
AAAAAAACTCCCAAGCGGGAATCACTGCCCTGGAAGAAGTCTAAAGGCAGCCATTCTCGT
GGCTCGGCCTCTTTGGAGGCTCCTGAGGCTGGTGATGCTGAAAATACAGAGGGTTCAGAA
TATGTCGGGGGCAGCAAAAAGCCCTGTGTGAAGCAGGAATCAGCTCTGAAGAAGCCAGTA
GTGAAATGTGCCTGGAAGTTTCCCAGTAGCACACTGGACGATGCTGGGGCAGGAGCTGGG
AGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCTGCCTCGAAAGTGGAGAAGGTGGACGACTGGAATGATGTGGAAGCTGAGGGTGAC
CCTCCTAAACCTTGGGTTAGAAAAGCTGGAGCTAAAATTCGCTCCAGGAGAACTAAGCAG
AAAAAAACTCCCAAGCGGGAATCACTGCCCTGGAAGAAGTCTAAAGGCAGCCATTCTCGT
GGCTCGGCCTCTTTGGAGGCTCCTGAGGCTGGTGATGCTGAAAATACAGAGGGTTCAGAA
TATGTCGGGGGCAGCAAAAAGCCCTGTGTGAAGCAGGAATCAGCTCTGAAGAAGCCAGTA
GTGAAATGTGCCTGGAAGTTTCCCAGTAGCACACTGGACGATGCTGGGGCAGGAGCTGGG
AGCCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-236, - strand, RNAz p=0.999991
               

               
               227-326, - strand, RNAz p=0.721878

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-236, - strand, RNAz p=0.999991
               

               
               227-326, - strand, RNAz p=0.721878

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC051688, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC051688, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-326, gnl|bosTau2|chr18 (49530091-49529763)
               

               
               1-326, gnl|canFam2|chr1 (112289685-112290229)
               

               
               1-326, gnl|dasNov1|scaffold_52622 (3415-2850)
               

               
               1-326, gnl|hg17|chr19 (51665156-51665700)
               

               
               1-326, gnl|Hg17|chr19 (51665514-51665186)
               

               
               1-326, gnl|loxAfr1|scaffold_34294 (17163-16625)
               

               
               1-326, gnl|mm7|chr7 (14724773-14724232)
               

               
               1-326, gnl|Mm7|chr7 (14724419-14724741)
               

               
               1-326, gnl|oryCun1|scaffold_120760 (2403-2922)
               

               
               1-326, gnl|panTro1|chr20 (48875750-48876294)
               

               
               1-326, gnl|rheMac2|chr19 (52823573-52824117)
               

               
               1-326, gnl|rn3|chr1 (77373969-77373434)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-326, gnl|bosTau2|chr18 (49530091-49529763)
               

               
               1-326, gnl|canFam2|chr1 (112289685-112290229)
               

               
               1-326, gnl|dasNov1|scaffold_52622 (3415-2850)
               

               
               1-326, gnl|hg17|chr19 (51665156-51665700)
               

               
               1-326, gnl|Hg17|chr19 (51665514-51665186)
               

               
               1-326, gnl|loxAfr1|scaffold_34294 (17163-16625)
               

               
               1-326, gnl|mm7|chr7 (14724773-14724232)
               

               
               1-326, gnl|Mm7|chr7 (14724419-14724741)
               

               
               1-326, gnl|oryCun1|scaffold_120760 (2403-2922)
               

               
               1-326, gnl|panTro1|chr20 (48875750-48876294)
               

               
               1-326, gnl|rheMac2|chr19 (52823573-52824117)
               

               
               1-326, gnl|rn3|chr1 (77373969-77373434)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	40-236, - strand, RNAz p=0.999991
	227-326, - strand, RNAz p=0.721878

	1-326, gnl\|bosTau2\|chr18 (49530091-49529763)
	1-326, gnl\|canFam2\|chr1 (112289685-112290229)
	1-326, gnl\|dasNov1\|scaffold_52622 (3415-2850)
	1-326, gnl\|hg17\|chr19 (51665156-51665700)
	1-326, gnl\|Hg17\|chr19 (51665514-51665186)
	1-326, gnl\|loxAfr1\|scaffold_34294 (17163-16625)
	1-326, gnl\|mm7\|chr7 (14724773-14724232)
	1-326, gnl\|Mm7\|chr7 (14724419-14724741)
	1-326, gnl\|oryCun1\|scaffold_120760 (2403-2922)
	1-326, gnl\|panTro1\|chr20 (48875750-48876294)
	1-326, gnl\|rheMac2\|chr19 (52823573-52824117)
	1-326, gnl\|rn3\|chr1 (77373969-77373434)