Non-Coding RNA Search

rfhi4031b_d9.y1

Sequence:


               
               GGAACACCCCGCCCCAGCGTCCAGCATCCCCAGCCCCACTCCCAGCGGTGCCTGAGGCTC
GCGGCCAGAAGGAGAGCTCTCCAAACTCTCCAAGAGTGAAAAATGTTTGCCTGGCTACTG
GCCATTCTTCCAGACCTCAGTTCAAATCACAGCGCTGCCCCTCTGTATCCTGTGCAAACC
ACTCTGAGTGTCCATTTCTCCATCTGTGAAATGGGGATGACAGCACGGATCTCCCAGCTT
GTTATGAGGATTTAGATAACGTGGGCAAAACACTTGGCCTAGAGCTCCAAAAAGTACTGC
CTGGGGACAAATCTAGCCATTGCCTTTTTTTCTTTATTAGCAGATGTGCCTGCCTTTTTT
TGTACTACTGAAAGCTAAGAACGGTTCTTACTTTCTTAAATAGTTGAAAGAAATTAAAAG
AGTATTTCACAACATGTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACACCCCGCCCCAGCGTCCAGCATCCCCAGCCCCACTCCCAGCGGTGCCTGAGGCTC
GCGGCCAGAAGGAGAGCTCTCCAAACTCTCCAAGAGTGAAAAATGTTTGCCTGGCTACTG
GCCATTCTTCCAGACCTCAGTTCAAATCACAGCGCTGCCCCTCTGTATCCTGTGCAAACC
ACTCTGAGTGTCCATTTCTCCATCTGTGAAATGGGGATGACAGCACGGATCTCCCAGCTT
GTTATGAGGATTTAGATAACGTGGGCAAAACACTTGGCCTAGAGCTCCAAAAAGTACTGC
CTGGGGACAAATCTAGCCATTGCCTTTTTTTCTTTATTAGCAGATGTGCCTGCCTTTTTT
TGTACTACTGAAAGCTAAGAACGGTTCTTACTTTCTTAAATAGTTGAAAGAAATTAAAAG
AGTATTTCACAACATGTGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               34-131, + strand, RNAz p=0.931413

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               34-131, + strand, RNAz p=0.931413

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               16-131, gnl|bosTau2|chr29 (37807844-37807962)
               

               
               16-131, gnl|canFam2|chr18 (54588023-54587780)
               

               
               16-131, gnl|dasNov1|scaffold_54226 (4706-4943)
               

               
               16-131, gnl|echTel1|scaffold_242496 (2647-2842)
               

               
               16-131, gnl|hg17|chr11 (65173056-65173314)
               

               
               16-131, gnl|Hg17|chr11 (65173266-65173149)
               

               
               16-131, gnl|mm7|chr19 (5547898-5547676)
               

               
               16-131, gnl|panTro1|chr9 (66418621-66418879)
               

               
               16-131, gnl|rheMac2|chr14 (8772371-8772117)
               

               
               16-131, gnl|rn3|chr1 (208431657-208431399)
               


               
               133-419, gnl|bosTau2|chr29 (37808060-37808343)
               

               
               133-419, gnl|Hg17|chr11 (65173147-65172572)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-131, gnl|bosTau2|chr29 (37807844-37807962)
               

               
               16-131, gnl|canFam2|chr18 (54588023-54587780)
               

               
               16-131, gnl|dasNov1|scaffold_54226 (4706-4943)
               

               
               16-131, gnl|echTel1|scaffold_242496 (2647-2842)
               

               
               16-131, gnl|hg17|chr11 (65173056-65173314)
               

               
               16-131, gnl|Hg17|chr11 (65173266-65173149)
               

               
               16-131, gnl|mm7|chr19 (5547898-5547676)
               

               
               16-131, gnl|panTro1|chr9 (66418621-66418879)
               

               
               16-131, gnl|rheMac2|chr14 (8772371-8772117)
               

               
               16-131, gnl|rn3|chr1 (208431657-208431399)
               


               
               133-419, gnl|bosTau2|chr29 (37808060-37808343)
               

               
               133-419, gnl|Hg17|chr11 (65173147-65172572)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	16-131, gnl\|bosTau2\|chr29 (37807844-37807962)
	16-131, gnl\|canFam2\|chr18 (54588023-54587780)
	16-131, gnl\|dasNov1\|scaffold_54226 (4706-4943)
	16-131, gnl\|echTel1\|scaffold_242496 (2647-2842)
	16-131, gnl\|hg17\|chr11 (65173056-65173314)
	16-131, gnl\|Hg17\|chr11 (65173266-65173149)
	16-131, gnl\|mm7\|chr19 (5547898-5547676)
	16-131, gnl\|panTro1\|chr9 (66418621-66418879)
	16-131, gnl\|rheMac2\|chr14 (8772371-8772117)
	16-131, gnl\|rn3\|chr1 (208431657-208431399)

	133-419, gnl\|bosTau2\|chr29 (37808060-37808343)
	133-419, gnl\|Hg17\|chr11 (65173147-65172572)