Non-Coding RNA Search

rfli716b_c21.y1

Sequence:


               
               GCAGAATTAGATCGTCGAGAACGAGAAATGCAAAACCTCAGTCAACATGGCAGAAAAAAT
AACTGGCCACCTCTTCCTGGCAATTTTCCTGTGGGACCTTGTTTCTATCAGGATTTTTCT
GTAGACATTCCTGTAGAATTTCAAAAGACAGTGAAGATTATGTACTATTTATGGATGTTC
CATGCTGTAACACTGTTTCTAAATATCTTCGGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAATTAGATCGTCGAGAACGAGAAATGCAAAACCTCAGTCAACATGGCAGAAAAAAT
AACTGGCCACCTCTTCCTGGCAATTTTCCTGTGGGACCTTGTTTCTATCAGGATTTTTCT
GTAGACATTCCTGTAGAATTTCAAAAGACAGTGAAGATTATGTACTATTTATGGATGTTC
CATGCTGTAACACTGTTTCTAAATATCTTCGGATG

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               49-178, gnl|bosTau2|chr10 (3514224-3514353)
               

               
               49-178, gnl|canFam2|chr3 (31245229-31245088)
               

               
               49-178, gnl|danRer3|chr14 (37489174-37489314)
               

               
               49-178, gnl|dasNov1|scaffold_4180 (3563-3704)
               

               
               49-178, gnl|echTel1|scaffold_158749 (3180-3321)
               

               
               49-178, gnl|fr1|chrUn (209997361-209997501)
               

               
               49-178, gnl|hg17|chr5 (77750350-77750491)
               

               
               49-178, gnl|Hg17|chr5 (77750354-77750483)
               

               
               49-178, gnl|loxAfr1|scaffold_54009 (8444-8303)
               

               
               49-178, gnl|mm7|chr13 (91292840-91292699)
               

               
               49-178, gnl|Mm7|chr13 (91292834-91292705)
               

               
               49-178, gnl|monDom2|scaffold_27 (37870653-37870512)
               

               
               49-178, gnl|oryCun1|scaffold_90352 (351-210)
               

               
               49-178, gnl|panTro1|chr4 (37465868-37465727)
               

               
               49-178, gnl|rheMac2|chr6 (74671355-74671496)
               

               
               49-178, gnl|rn3|chr2 (24441525-24441384)
               

               
               49-178, gnl|tetNig1|chrUn_random (1680612-1680752)
               

               
               49-178, gnl|xenTro1|scaffold_183 (1774890-1774750)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-178, gnl|bosTau2|chr10 (3514224-3514353)
               

               
               49-178, gnl|canFam2|chr3 (31245229-31245088)
               

               
               49-178, gnl|danRer3|chr14 (37489174-37489314)
               

               
               49-178, gnl|dasNov1|scaffold_4180 (3563-3704)
               

               
               49-178, gnl|echTel1|scaffold_158749 (3180-3321)
               

               
               49-178, gnl|fr1|chrUn (209997361-209997501)
               

               
               49-178, gnl|hg17|chr5 (77750350-77750491)
               

               
               49-178, gnl|Hg17|chr5 (77750354-77750483)
               

               
               49-178, gnl|loxAfr1|scaffold_54009 (8444-8303)
               

               
               49-178, gnl|mm7|chr13 (91292840-91292699)
               

               
               49-178, gnl|Mm7|chr13 (91292834-91292705)
               

               
               49-178, gnl|monDom2|scaffold_27 (37870653-37870512)
               

               
               49-178, gnl|oryCun1|scaffold_90352 (351-210)
               

               
               49-178, gnl|panTro1|chr4 (37465868-37465727)
               

               
               49-178, gnl|rheMac2|chr6 (74671355-74671496)
               

               
               49-178, gnl|rn3|chr2 (24441525-24441384)
               

               
               49-178, gnl|tetNig1|chrUn_random (1680612-1680752)
               

               
               49-178, gnl|xenTro1|scaffold_183 (1774890-1774750)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fli (0.202881)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	49-178, gnl\|bosTau2\|chr10 (3514224-3514353)
	49-178, gnl\|canFam2\|chr3 (31245229-31245088)
	49-178, gnl\|danRer3\|chr14 (37489174-37489314)
	49-178, gnl\|dasNov1\|scaffold_4180 (3563-3704)
	49-178, gnl\|echTel1\|scaffold_158749 (3180-3321)
	49-178, gnl\|fr1\|chrUn (209997361-209997501)
	49-178, gnl\|hg17\|chr5 (77750350-77750491)
	49-178, gnl\|Hg17\|chr5 (77750354-77750483)
	49-178, gnl\|loxAfr1\|scaffold_54009 (8444-8303)
	49-178, gnl\|mm7\|chr13 (91292840-91292699)
	49-178, gnl\|Mm7\|chr13 (91292834-91292705)
	49-178, gnl\|monDom2\|scaffold_27 (37870653-37870512)
	49-178, gnl\|oryCun1\|scaffold_90352 (351-210)
	49-178, gnl\|panTro1\|chr4 (37465868-37465727)
	49-178, gnl\|rheMac2\|chr6 (74671355-74671496)
	49-178, gnl\|rn3\|chr2 (24441525-24441384)
	49-178, gnl\|tetNig1\|chrUn_random (1680612-1680752)
	49-178, gnl\|xenTro1\|scaffold_183 (1774890-1774750)