Non-Coding RNA Search

rfli731b_l16.y1

Sequence:


               
               ATGCTGAAGGCGACCTCTCAGAGCGAGATGAAACGCTGGATGACCTCACTGGCCCCCAAC
CGAAGAACCAAGTTTGTCTCTTTCACATCCCGGCTGCTGGACTGCCCCCAGGTCCAGTGC
GTGCACCCGTATGTGGCCCAGCAGGCAGACGAGCTGACCCTGGAGCTGGCCGACATCCTG
AACATTCTGGACAAGACGGAGGATGGGTGGATCTTTGGCGAGCGTCTGCACGACCAGGAG
AGAGGCTGGTTCCCCAGCAACATGGCTGAGGAGATCCTGAACCCCAAGATTCGGTCCCAG
AACCTCAAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTGAAGGCGACCTCTCAGAGCGAGATGAAACGCTGGATGACCTCACTGGCCCCCAAC
CGAAGAACCAAGTTTGTCTCTTTCACATCCCGGCTGCTGGACTGCCCCCAGGTCCAGTGC
GTGCACCCGTATGTGGCCCAGCAGGCAGACGAGCTGACCCTGGAGCTGGCCGACATCCTG
AACATTCTGGACAAGACGGAGGATGGGTGGATCTTTGGCGAGCGTCTGCACGACCAGGAG
AGAGGCTGGTTCCCCAGCAACATGGCTGAGGAGATCCTGAACCCCAAGATTCGGTCCCAG
AACCTCAAGGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7689361|gb|AAF67747.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7689361|gb|AAF67747.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               205-311, - strand, RNAz p=0.505953

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-311, - strand, RNAz p=0.505953

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               205-311, gnl|bosTau2|chr3 (78581320-78581426)
               

               
               205-311, gnl|canFam2|chr25 (47476502-47476650)
               

               
               205-311, gnl|danRer3|chr20 (17624432-17624306)
               

               
               205-311, gnl|echTel1|scaffold_224826 (15042-14894)
               

               
               205-311, gnl|fr1|chrUn (143900882-143901035)
               

               
               205-311, gnl|galGal2|chr9 (499815-499963)
               

               
               205-311, gnl|hg17|chr2 (233569763-233569911)
               

               
               205-311, gnl|Hg17|chr2 (233569895-233569789)
               

               
               205-311, gnl|loxAfr1|scaffold_16312 (47244-47391)
               

               
               205-311, gnl|mm7|chr1 (87378518-87378668)
               

               
               205-311, gnl|Mm7|chr1 (87378650-87378544)
               

               
               205-311, gnl|monDom2|scaffold_174 (367874-367742)
               

               
               205-311, gnl|oryCun1|scaffold_120455 (279-424)
               

               
               205-311, gnl|rheMac2|chr12 (96777177-96777325)
               

               
               205-311, gnl|rn3|chr9 (86478413-86478564)
               

               
               205-311, gnl|tetNig1|chrUn_random (128099434-128099588)
               

               
               205-311, gnl|xenTro1|scaffold_382 (519667-519516)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               205-311, gnl|bosTau2|chr3 (78581320-78581426)
               

               
               205-311, gnl|canFam2|chr25 (47476502-47476650)
               

               
               205-311, gnl|danRer3|chr20 (17624432-17624306)
               

               
               205-311, gnl|echTel1|scaffold_224826 (15042-14894)
               

               
               205-311, gnl|fr1|chrUn (143900882-143901035)
               

               
               205-311, gnl|galGal2|chr9 (499815-499963)
               

               
               205-311, gnl|hg17|chr2 (233569763-233569911)
               

               
               205-311, gnl|Hg17|chr2 (233569895-233569789)
               

               
               205-311, gnl|loxAfr1|scaffold_16312 (47244-47391)
               

               
               205-311, gnl|mm7|chr1 (87378518-87378668)
               

               
               205-311, gnl|Mm7|chr1 (87378650-87378544)
               

               
               205-311, gnl|monDom2|scaffold_174 (367874-367742)
               

               
               205-311, gnl|oryCun1|scaffold_120455 (279-424)
               

               
               205-311, gnl|rheMac2|chr12 (96777177-96777325)
               

               
               205-311, gnl|rn3|chr9 (86478413-86478564)
               

               
               205-311, gnl|tetNig1|chrUn_random (128099434-128099588)
               

               
               205-311, gnl|xenTro1|scaffold_382 (519667-519516)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fli (0.202881)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	205-311, gnl\|bosTau2\|chr3 (78581320-78581426)
	205-311, gnl\|canFam2\|chr25 (47476502-47476650)
	205-311, gnl\|danRer3\|chr20 (17624432-17624306)
	205-311, gnl\|echTel1\|scaffold_224826 (15042-14894)
	205-311, gnl\|fr1\|chrUn (143900882-143901035)
	205-311, gnl\|galGal2\|chr9 (499815-499963)
	205-311, gnl\|hg17\|chr2 (233569763-233569911)
	205-311, gnl\|Hg17\|chr2 (233569895-233569789)
	205-311, gnl\|loxAfr1\|scaffold_16312 (47244-47391)
	205-311, gnl\|mm7\|chr1 (87378518-87378668)
	205-311, gnl\|Mm7\|chr1 (87378650-87378544)
	205-311, gnl\|monDom2\|scaffold_174 (367874-367742)
	205-311, gnl\|oryCun1\|scaffold_120455 (279-424)
	205-311, gnl\|rheMac2\|chr12 (96777177-96777325)
	205-311, gnl\|rn3\|chr9 (86478413-86478564)
	205-311, gnl\|tetNig1\|chrUn_random (128099434-128099588)
	205-311, gnl\|xenTro1\|scaffold_382 (519667-519516)