Non-Coding RNA Search

rfty510b_d6r1.y1

Sequence:


               
               AGCGGTGTATGCCAAAATGATGGGAATCCCTATTCGAAAATTTATTTGTGCTTCTAATCA
GAACCATGTTTTGACTGATTTTATAAAAACAGGACATTATGATCTAAGAGAAAGAAAATT
AGCACAAACCTTTTCACCAGCAATAGATATTCTCAAATCTTCAAACCTGGAACGCCATTT
ACACTTGATGGCTAATAAGGATGGACAATTAATGACAAGATTATTTAATCAATTAGAAGA
GCAGCATCACTTTCAGATAGAAAAGATCCTAGTTGAGAAACTTCAGCAGGACTTCGCAGC
CGACTGGTGCTCTGAGGGAGAGTGCCTCGCAGCTATCCACTCTACCTACAATACTTCGGG
GTATATTTAGGATCCACACACTGCTGTTGCAAAAGTAGTTGCAGACAGAATGCAAGACAA
AACTTGCCCAGTTATTGTCTCATCGACAGCTCATTACTCAAAGTTTGCACCTACTATCAT
GCAGGCTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGTGTATGCCAAAATGATGGGAATCCCTATTCGAAAATTTATTTGTGCTTCTAATCA
GAACCATGTTTTGACTGATTTTATAAAAACAGGACATTATGATCTAAGAGAAAGAAAATT
AGCACAAACCTTTTCACCAGCAATAGATATTCTCAAATCTTCAAACCTGGAACGCCATTT
ACACTTGATGGCTAATAAGGATGGACAATTAATGACAAGATTATTTAATCAATTAGAAGA
GCAGCATCACTTTCAGATAGAAAAGATCCTAGTTGAGAAACTTCAGCAGGACTTCGCAGC
CGACTGGTGCTCTGAGGGAGAGTGCCTCGCAGCTATCCACTCTACCTACAATACTTCGGG
GTATATTTAGGATCCACACACTGCTGTTGCAAAAGTAGTTGCAGACAGAATGCAAGACAA
AACTTGCCCAGTTATTGTCTCATCGACAGCTCATTACTCAAAGTTTGCACCTACTATCAT
GCAGGCTTTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48146809|emb|CAG33627.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48146809|emb|CAG33627.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               340-459, + strand, RNAz p=0.521809
               

               
               360-492, - strand, RNAz p=0.957173

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               340-459, + strand, RNAz p=0.521809
               

               
               360-492, - strand, RNAz p=0.957173

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-492, gnl|bosTau2|chr13 (14239387-14239878)
               

               
               1-492, gnl|canFam2|chr2 (11379494-11378377)
               

               
               1-492, gnl|danRer3|chrUn (102075044-102073926)
               

               
               1-492, gnl|dasNov1|scaffold_11408 (34301-33184)
               

               
               1-492, gnl|echTel1|scaffold_315744 (1005-2121)
               

               
               1-492, gnl|fr1|chrUn (138190614-138189401)
               

               
               1-492, gnl|galGal2|chr2 (16051647-16050530)
               

               
               1-492, gnl|hg17|chr10 (25353089-25354206)
               

               
               1-492, gnl|Hg17|chr10 (25353706-25354197)
               

               
               1-492, gnl|loxAfr1|scaffold_45193 (9755-10873)
               

               
               1-492, gnl|mm7|chr2 (21277526-21278643)
               

               
               1-492, gnl|Mm7|chr2 (21278143-21278634)
               

               
               1-492, gnl|monDom2|scaffold_7 (43505932-43504815)
               

               
               1-492, gnl|oryCun1|scaffold_147316 (8229-7105)
               

               
               1-492, gnl|panTro1|chr8_random (16960221-16961338)
               

               
               1-492, gnl|rheMac2|chr9 (25207348-25208465)
               

               
               1-492, gnl|rn3|chr17 (95218119-95219236)
               

               
               1-492, gnl|tetNig1|chr6 (5605988-5607174)
               

               
               1-492, gnl|xenTro1|scaffold_42 (1559248-1558131)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr13 (14239387-14239878)
               

               
               1-492, gnl|canFam2|chr2 (11379494-11378377)
               

               
               1-492, gnl|danRer3|chrUn (102075044-102073926)
               

               
               1-492, gnl|dasNov1|scaffold_11408 (34301-33184)
               

               
               1-492, gnl|echTel1|scaffold_315744 (1005-2121)
               

               
               1-492, gnl|fr1|chrUn (138190614-138189401)
               

               
               1-492, gnl|galGal2|chr2 (16051647-16050530)
               

               
               1-492, gnl|hg17|chr10 (25353089-25354206)
               

               
               1-492, gnl|Hg17|chr10 (25353706-25354197)
               

               
               1-492, gnl|loxAfr1|scaffold_45193 (9755-10873)
               

               
               1-492, gnl|mm7|chr2 (21277526-21278643)
               

               
               1-492, gnl|Mm7|chr2 (21278143-21278634)
               

               
               1-492, gnl|monDom2|scaffold_7 (43505932-43504815)
               

               
               1-492, gnl|oryCun1|scaffold_147316 (8229-7105)
               

               
               1-492, gnl|panTro1|chr8_random (16960221-16961338)
               

               
               1-492, gnl|rheMac2|chr9 (25207348-25208465)
               

               
               1-492, gnl|rn3|chr17 (95218119-95219236)
               

               
               1-492, gnl|tetNig1|chr6 (5605988-5607174)
               

               
               1-492, gnl|xenTro1|scaffold_42 (1559248-1558131)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	340-459, + strand, RNAz p=0.521809
	360-492, - strand, RNAz p=0.957173

	1-492, gnl\|bosTau2\|chr13 (14239387-14239878)
	1-492, gnl\|canFam2\|chr2 (11379494-11378377)
	1-492, gnl\|danRer3\|chrUn (102075044-102073926)
	1-492, gnl\|dasNov1\|scaffold_11408 (34301-33184)
	1-492, gnl\|echTel1\|scaffold_315744 (1005-2121)
	1-492, gnl\|fr1\|chrUn (138190614-138189401)
	1-492, gnl\|galGal2\|chr2 (16051647-16050530)
	1-492, gnl\|hg17\|chr10 (25353089-25354206)
	1-492, gnl\|Hg17\|chr10 (25353706-25354197)
	1-492, gnl\|loxAfr1\|scaffold_45193 (9755-10873)
	1-492, gnl\|mm7\|chr2 (21277526-21278643)
	1-492, gnl\|Mm7\|chr2 (21278143-21278634)
	1-492, gnl\|monDom2\|scaffold_7 (43505932-43504815)
	1-492, gnl\|oryCun1\|scaffold_147316 (8229-7105)
	1-492, gnl\|panTro1\|chr8_random (16960221-16961338)
	1-492, gnl\|rheMac2\|chr9 (25207348-25208465)
	1-492, gnl\|rn3\|chr17 (95218119-95219236)
	1-492, gnl\|tetNig1\|chr6 (5605988-5607174)
	1-492, gnl\|xenTro1\|scaffold_42 (1559248-1558131)