Non-Coding RNA Search

rfty513b_b3r1.y1

Sequence:


               
               TATGTCAGGCAGTCTGCCAGTTTTTTAACTGTAGAATCTTCATAACATCAAAGAGTTGCA
TGTTCTAGAGCTTAGAGAAAAATGGACACACTGAATCCTAGCAACTGAAGGCAAATAGAT
ACGTCAGTGCCACACTATGTCAGCAGTTTGTCCTGTTTGCTTGGGGAACTCTTTTGTTTT
AGTAGCATGTTTACAATGAAGTCTTTCACTGGAGCAGGACTACAGGACTGAATATATACT
CTGTATTGTCTGAGCGGATTCTGTATCAAAGACATGTATACAGGCATATTATTTATTTAT
TGCTAATATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTCAGGCAGTCTGCCAGTTTTTTAACTGTAGAATCTTCATAACATCAAAGAGTTGCA
TGTTCTAGAGCTTAGAGAAAAATGGACACACTGAATCCTAGCAACTGAAGGCAAATAGAT
ACGTCAGTGCCACACTATGTCAGCAGTTTGTCCTGTTTGCTTGGGGAACTCTTTTGTTTT
AGTAGCATGTTTACAATGAAGTCTTTCACTGGAGCAGGACTACAGGACTGAATATATACT
CTGTATTGTCTGAGCGGATTCTGTATCAAAGACATGTATACAGGCATATTATTTATTTAT
TGCTAATATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               96-235, - strand, RNAz p=0.600696

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-235, - strand, RNAz p=0.600696

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               21-311, gnl|bosTau2|chr15 (24506763-24507068)
               

               
               21-311, gnl|canFam2|chr21 (40582271-40582645)
               

               
               21-311, gnl|echTel1|scaffold_236144 (9308-8973)
               

               
               21-311, gnl|hg17|chr11 (14666327-14666704)
               

               
               21-311, gnl|Hg17|chr11 (14666406-14666710)
               

               
               21-311, gnl|mm7|chr7 (110346487-110346886)
               

               
               21-311, gnl|Mm7|chr7 (110346562-110346892)
               

               
               21-311, gnl|monDom2|scaffold_10 (57301773-57301423)
               

               
               21-311, gnl|oryCun1|scaffold_85320 (842-462)
               

               
               21-311, gnl|panTro1|chr9 (14875851-14876228)
               

               
               21-311, gnl|rheMac2|chr14 (57249567-57249194)
               

               
               21-311, gnl|rn3|chr1 (172559727-172560099)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-311, gnl|bosTau2|chr15 (24506763-24507068)
               

               
               21-311, gnl|canFam2|chr21 (40582271-40582645)
               

               
               21-311, gnl|echTel1|scaffold_236144 (9308-8973)
               

               
               21-311, gnl|hg17|chr11 (14666327-14666704)
               

               
               21-311, gnl|Hg17|chr11 (14666406-14666710)
               

               
               21-311, gnl|mm7|chr7 (110346487-110346886)
               

               
               21-311, gnl|Mm7|chr7 (110346562-110346892)
               

               
               21-311, gnl|monDom2|scaffold_10 (57301773-57301423)
               

               
               21-311, gnl|oryCun1|scaffold_85320 (842-462)
               

               
               21-311, gnl|panTro1|chr9 (14875851-14876228)
               

               
               21-311, gnl|rheMac2|chr14 (57249567-57249194)
               

               
               21-311, gnl|rn3|chr1 (172559727-172560099)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	21-311, gnl\|bosTau2\|chr15 (24506763-24507068)
	21-311, gnl\|canFam2\|chr21 (40582271-40582645)
	21-311, gnl\|echTel1\|scaffold_236144 (9308-8973)
	21-311, gnl\|hg17\|chr11 (14666327-14666704)
	21-311, gnl\|Hg17\|chr11 (14666406-14666710)
	21-311, gnl\|mm7\|chr7 (110346487-110346886)
	21-311, gnl\|Mm7\|chr7 (110346562-110346892)
	21-311, gnl\|monDom2\|scaffold_10 (57301773-57301423)
	21-311, gnl\|oryCun1\|scaffold_85320 (842-462)
	21-311, gnl\|panTro1\|chr9 (14875851-14876228)
	21-311, gnl\|rheMac2\|chr14 (57249567-57249194)
	21-311, gnl\|rn3\|chr1 (172559727-172560099)