Non-Coding RNA Search

rfty514b_h22r1.y1

Sequence:


               
               AATATGGTTCTGAGACAGGCTTTTATTCACCCCCACATTTCTTGCCACTCTCTCCTGCTC
ATGGTTTCAGGCTGTACACCCAGCAGCCCAACAGCCAGCAATCGCTCAATTCCCTGCGGT
ATCCCAAGGAAGCTCTCAACAGCAGCTGATACAGAACTTCTACCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCTGGCTACAACCCTGCATCAACAACAGCTGCTGACTCAGCAGGC
TGCCTTGCAGCAGAAGACCACGGTGGCAGCCATACAGCCACCCCAGGCACAGCCGGTCAC
AGCCTCCCAGCCACCCCCTGCCCAAGAGCCAGCGGTGAGAATCAGCAGAAGGGGAATACG
CAGTGAGGGCTCAGGAAAGGCCGGGGAAGAGGCGGTAGCAGCTGGTGTGGGAAGCTGCTT
CCCTATCCTTGTGTGAAAATATTTGATCTTTTCTTGGTACCTCTGTGAAAAGGATGAGGT
AT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATGGTTCTGAGACAGGCTTTTATTCACCCCCACATTTCTTGCCACTCTCTCCTGCTC
ATGGTTTCAGGCTGTACACCCAGCAGCCCAACAGCCAGCAATCGCTCAATTCCCTGCGGT
ATCCCAAGGAAGCTCTCAACAGCAGCTGATACAGAACTTCTACCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCTGGCTACAACCCTGCATCAACAACAGCTGCTGACTCAGCAGGC
TGCCTTGCAGCAGAAGACCACGGTGGCAGCCATACAGCCACCCCAGGCACAGCCGGTCAC
AGCCTCCCAGCCACCCCCTGCCCAAGAGCCAGCGGTGAGAATCAGCAGAAGGGGAATACG
CAGTGAGGGCTCAGGAAAGGCCGGGGAAGAGGCGGTAGCAGCTGGTGTGGGAAGCTGCTT
CCCTATCCTTGTGTGAAAATATTTGATCTTTTCTTGGTACCTCTGTGAAAAGGATGAGGT
AT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-419, - strand, RNAz p=0.999982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-419, - strand, RNAz p=0.999982

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               128-237, - strand, RNAmicro p=0.999996

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               128-237, - strand, RNAmicro p=0.999996

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               198-334, DA122175 BRACE3 Homo sapiens cDNA clone BRACE3043611 5', mRNA 
(dbj|DA122175.1|), blast E-value=2e-17, identity=83.94% 
               

               
               198-270, RC5-NN1165-171100-032-B07 NN1165 Homo sapiens cDNA, mRNA sequence 
(gb|BF955325.1|), blast E-value=0.000000000000006, identity=90.41% 
               

               
               207-334, PM3-GN0303-211200-002-e07 GN0303 Homo sapiens cDNA, mRNA sequence 
(gb|BG014396.1|), blast E-value=9e-17, identity=84.38% 
               

               
               198-163, 963892 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK775080.1|), 
blast E-value=0.00000000002, identity=100% 
               

               
               198-163, 4076935 BARC 9BOV Bos taurus cDNA clone 9BOV11_O08 3', mRNA 
(gb|CK962372.1|), blast E-value=0.00000000002, identity=100% 
               

               
               198-334, 17000424188115 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN362109.1|), blast E-value=2e-17, identity=83.94%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               198-334, DA122175 BRACE3 Homo sapiens cDNA clone BRACE3043611 5', mRNA 
(dbj|DA122175.1|), blast E-value=2e-17, identity=83.94% 
               

               
               198-270, RC5-NN1165-171100-032-B07 NN1165 Homo sapiens cDNA, mRNA sequence 
(gb|BF955325.1|), blast E-value=0.000000000000006, identity=90.41% 
               

               
               207-334, PM3-GN0303-211200-002-e07 GN0303 Homo sapiens cDNA, mRNA sequence 
(gb|BG014396.1|), blast E-value=9e-17, identity=84.38% 
               

               
               198-163, 963892 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK775080.1|), 
blast E-value=0.00000000002, identity=100% 
               

               
               198-163, 4076935 BARC 9BOV Bos taurus cDNA clone 9BOV11_O08 3', mRNA 
(gb|CK962372.1|), blast E-value=0.00000000002, identity=100% 
               

               
               198-334, 17000424188115 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN362109.1|), blast E-value=2e-17, identity=83.94%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-419, gnl|bosTau2|chr11 (48833056-48833461)
               

               
               3-419, gnl|Hg17|chr2 (69653579-69653158)
               

               
               3-419, gnl|Mm7|chr6 (87034060-87034429)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-419, gnl|bosTau2|chr11 (48833056-48833461)
               

               
               3-419, gnl|Hg17|chr2 (69653579-69653158)
               

               
               3-419, gnl|Mm7|chr6 (87034060-87034429)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	198-334, DA122175 BRACE3 Homo sapiens cDNA clone BRACE3043611 5', mRNA (dbj\|DA122175.1\|), blast E-value=2e-17, identity=83.94%
	198-270, RC5-NN1165-171100-032-B07 NN1165 Homo sapiens cDNA, mRNA sequence (gb\|BF955325.1\|), blast E-value=0.000000000000006, identity=90.41%
	207-334, PM3-GN0303-211200-002-e07 GN0303 Homo sapiens cDNA, mRNA sequence (gb\|BG014396.1\|), blast E-value=9e-17, identity=84.38%
	198-163, 963892 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK775080.1\|), blast E-value=0.00000000002, identity=100%
	198-163, 4076935 BARC 9BOV Bos taurus cDNA clone 9BOV11_O08 3', mRNA (gb\|CK962372.1\|), blast E-value=0.00000000002, identity=100%
	198-334, 17000424188115 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN362109.1\|), blast E-value=2e-17, identity=83.94%

	3-419, gnl\|bosTau2\|chr11 (48833056-48833461)
	3-419, gnl\|Hg17\|chr2 (69653579-69653158)
	3-419, gnl\|Mm7\|chr6 (87034060-87034429)