Non-Coding RNA Search

rfty514b_o20r1.y1

Sequence:


               
               ACTTCAAGTGCCCCTGTGTGCTGGACCTGAAGATGGGCACCCGGCAGCACGGTGATGATG
CATCAGCTGAGAAGGCGGCCAGGCAGATGCGGAAGTGTGAGCAGAGTACGTCAGCGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCAAGTGCCCCTGTGTGCTGGACCTGAAGATGGGCACCCGGCAGCACGGTGATGATG
CATCAGCTGAGAAGGCGGCCAGGCAGATGCGGAAGTGTGAGCAGAGTACGTCAGCGAC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-118, gnl|bosTau2|chr22 (38101087-38100970)
               

               
               1-118, gnl|canFam2|chr20 (42546314-42546207)
               

               
               1-118, gnl|danRer3|chr22 (49105075-49104968)
               

               
               1-118, gnl|echTel1|scaffold_297184 (5808-5915)
               

               
               1-118, gnl|fr1|chrUn (228439197-228439090)
               

               
               1-118, gnl|galGal2|chr12 (2107191-2107298)
               

               
               1-118, gnl|hg17|chr3 (49740539-49740646)
               

               
               1-118, gnl|Hg17|chr3 (49740685-49740568)
               

               
               1-118, gnl|loxAfr1|scaffold_29625 (17668-17775)
               

               
               1-118, gnl|mm7|chr9 (107776561-107776454)
               

               
               1-118, gnl|Mm7|chr9 (107776413-107776530)
               

               
               1-118, gnl|monDom2|scaffold_5 (75046035-75045928)
               

               
               1-118, gnl|oryCun1|scaffold_90684 (619-512)
               

               
               1-118, gnl|panTro1|chr2 (51275468-51275575)
               

               
               1-118, gnl|rheMac2|chr2 (86690730-86690623)
               

               
               1-118, gnl|rn3|chr8 (113332295-113332188)
               

               
               1-118, gnl|tetNig1|chrUn_random (5850763-5850870)
               

               
               1-118, gnl|xenTro1|scaffold_193 (1222072-1222179)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-118, gnl|bosTau2|chr22 (38101087-38100970)
               

               
               1-118, gnl|canFam2|chr20 (42546314-42546207)
               

               
               1-118, gnl|danRer3|chr22 (49105075-49104968)
               

               
               1-118, gnl|echTel1|scaffold_297184 (5808-5915)
               

               
               1-118, gnl|fr1|chrUn (228439197-228439090)
               

               
               1-118, gnl|galGal2|chr12 (2107191-2107298)
               

               
               1-118, gnl|hg17|chr3 (49740539-49740646)
               

               
               1-118, gnl|Hg17|chr3 (49740685-49740568)
               

               
               1-118, gnl|loxAfr1|scaffold_29625 (17668-17775)
               

               
               1-118, gnl|mm7|chr9 (107776561-107776454)
               

               
               1-118, gnl|Mm7|chr9 (107776413-107776530)
               

               
               1-118, gnl|monDom2|scaffold_5 (75046035-75045928)
               

               
               1-118, gnl|oryCun1|scaffold_90684 (619-512)
               

               
               1-118, gnl|panTro1|chr2 (51275468-51275575)
               

               
               1-118, gnl|rheMac2|chr2 (86690730-86690623)
               

               
               1-118, gnl|rn3|chr8 (113332295-113332188)
               

               
               1-118, gnl|tetNig1|chrUn_random (5850763-5850870)
               

               
               1-118, gnl|xenTro1|scaffold_193 (1222072-1222179)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	1-118, gnl\|bosTau2\|chr22 (38101087-38100970)
	1-118, gnl\|canFam2\|chr20 (42546314-42546207)
	1-118, gnl\|danRer3\|chr22 (49105075-49104968)
	1-118, gnl\|echTel1\|scaffold_297184 (5808-5915)
	1-118, gnl\|fr1\|chrUn (228439197-228439090)
	1-118, gnl\|galGal2\|chr12 (2107191-2107298)
	1-118, gnl\|hg17\|chr3 (49740539-49740646)
	1-118, gnl\|Hg17\|chr3 (49740685-49740568)
	1-118, gnl\|loxAfr1\|scaffold_29625 (17668-17775)
	1-118, gnl\|mm7\|chr9 (107776561-107776454)
	1-118, gnl\|Mm7\|chr9 (107776413-107776530)
	1-118, gnl\|monDom2\|scaffold_5 (75046035-75045928)
	1-118, gnl\|oryCun1\|scaffold_90684 (619-512)
	1-118, gnl\|panTro1\|chr2 (51275468-51275575)
	1-118, gnl\|rheMac2\|chr2 (86690730-86690623)
	1-118, gnl\|rn3\|chr8 (113332295-113332188)
	1-118, gnl\|tetNig1\|chrUn_random (5850763-5850870)
	1-118, gnl\|xenTro1\|scaffold_193 (1222072-1222179)