rfty518b_m10.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCATAAGAATAGGAGGTCGGCAGAACAGAAACAATAGGTCACCCAAGCTTTCTCCTGGGC TAGTGGCTCTGGATACAGACTTATAGGTGGGGATAGGTGTACCCCGAGTTTCTTACAAAA GAAAACCATCCCTCGAGGAGGAGCTGAGATATGCCATGCAAAATAGTTTTTCCTGCAGAG GGCACAGGAGAAAGGGCAGCTGACGCTCCTGTCTAGGAGACAGGAGAGTGGTGAGGAAGT TCTAGTACCATGAAGTAAGACAAAGGCAGAGGGAGAATCCTGAGGTTTTTGCCAATGTGA GCACTGGTACACACACAGCTAAAGACCAAAAAGCCACCAAGAACCCTCAGAGCCAGATCC CATCCACATACACTGGCTCTACAAAGTGCTGCAGGAGATTCTTGCCGTGAACTAAGCCAG GTTAGTTGCCTGGCTACGGGTGGTGGGGAGGGCAATACATTTATATTTTCAGAGGGATGA GGTGGGAAGAACAGCCATGATCTAGTAAAAAGAGACCTGCAAGAAGCAGAAAATATTTAG AGAACATTTTAATATATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCATAAGAATAGGAGGTCGGCAGAACAGAAACAATAGGTCACCCAAGCTTTCTCCTGGGC TAGTGGCTCTGGATACAGACTTATAGGTGGGGATAGGTGTACCCCGAGTTTCTTACAAAA GAAAACCATCCCTCGAGGAGGAGCTGAGATATGCCATGCAAAATAGTTTTTCCTGCAGAG GGCACAGGAGAAAGGGCAGCTGACGCTCCTGTCTAGGAGACAGGAGAGTGGTGAGGAAGT TCTAGTACCATGAAGTAAGACAAAGGCAGAGGGAGAATCCTGAGGTTTTTGCCAATGTGA GCACTGGTACACACACAGCTAAAGACCAAAAAGCCACCAAGAACCCTCAGAGCCAGATCC CATCCACATACACTGGCTCTACAAAGTGCTGCAGGAGATTCTTGCCGTGAACTAAGCCAG GTTAGTTGCCTGGCTACGGGTGGTGGGGAGGGCAATACATTTATATTTTCAGAGGGATGA GGTGGGAAGAACAGCCATGATCTAGTAAAAAGAGACCTGCAAGAAGCAGAAAATATTTAG AGAACATTTTAATATATA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-349, - strand, RNAz p=0.997061 | |
| 126-291, - strand, RNAz p=0.98578 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-349, - strand, RNAz p=0.997061 | |
| 126-291, - strand, RNAz p=0.98578 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 126-291, 959441 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK771194.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, 4068012 BARC 10BOV Bos taurus cDNA clone 10BOV15_C13 5', mRNA (gb|CK944264.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, 4091507 BARC 10BOV Bos taurus cDNA clone 10BOV29_N10 3', mRNA (gb|CK951813.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, BE04014B2F02 BE04 Normalized and Subtracted bovine embryonic and (gb|CN438085.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, LB0058.CR_A04 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT853368.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, Hw_loin_51_050810_A09 Bos taurus CF-24-HW loin cDNA library Bos (gb|DV794987.1|), blast E-value=2e-35, identity=86.98% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 126-291, 959441 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK771194.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, 4068012 BARC 10BOV Bos taurus cDNA clone 10BOV15_C13 5', mRNA (gb|CK944264.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, 4091507 BARC 10BOV Bos taurus cDNA clone 10BOV29_N10 3', mRNA (gb|CK951813.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, BE04014B2F02 BE04 Normalized and Subtracted bovine embryonic and (gb|CN438085.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, LB0058.CR_A04 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT853368.1|), blast E-value=2e-35, identity=86.98% | |
| 126-291, Hw_loin_51_050810_A09 Bos taurus CF-24-HW loin cDNA library Bos (gb|DV794987.1|), blast E-value=2e-35, identity=86.98% |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_152344, - |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 4-558, gnl|bosTau2|chr19 (38228302-38227748) | |
| 4-558, gnl|canFam2|chr9 (22648035-22647485) | |
| 4-558, gnl|canFam2|chr9 (22648035-22647485) | |
| 4-558, gnl|dasNov1|scaffold_39331 (3686-4241) | |
| 4-558, gnl|dasNov1|scaffold_39331 (3686-4241) | |
| 4-558, gnl|echTel1|scaffold_291948 (45721-46236) | |
| 4-558, gnl|echTel1|scaffold_291948 (45721-46236) | |
| 4-558, gnl|hg17|chr17 (39467923-39468468) | |
| 4-558, gnl|Hg17|chr17 (39467960-39468512) | |
| 4-558, gnl|hg17|chr8 (35501052-35501597) | |
| 4-558, gnl|loxAfr1|scaffold_4197 (26932-27478) | |
| 4-558, gnl|loxAfr1|scaffold_4197 (26932-27478) | |
| 4-558, gnl|mm7|chr11 (102271968-102272491) | |
| 4-558, gnl|mm7|chr11 (102271968-102272491) | |
| 4-558, gnl|Mm7|chr11 (102272002-102272535) | |
| 4-558, gnl|monDom2|scaffold_18 (42783243-42782683) | |
| 4-558, gnl|monDom2|scaffold_18 (42783243-42782683) | |
| 4-558, gnl|oryCun1|scaffold_87458 (1091-1635) | |
| 4-558, gnl|oryCun1|scaffold_87458 (1091-1635) | |
| 4-558, gnl|panTro1|chr19 (42653512-42654058) | |
| 4-558, gnl|panTro1|chr19 (42653512-42654058) | |
| 4-558, gnl|rheMac2|chr14 (30133692-30133151) | |
| 4-558, gnl|rheMac2|chr16 (54110432-54110972) | |
| 4-558, gnl|rn3|chr10 (91246285-91246807) | |
| 4-558, gnl|rn3|chr10 (91246285-91246807) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-558, gnl|bosTau2|chr19 (38228302-38227748) | |
| 4-558, gnl|canFam2|chr9 (22648035-22647485) | |
| 4-558, gnl|canFam2|chr9 (22648035-22647485) | |
| 4-558, gnl|dasNov1|scaffold_39331 (3686-4241) | |
| 4-558, gnl|dasNov1|scaffold_39331 (3686-4241) | |
| 4-558, gnl|echTel1|scaffold_291948 (45721-46236) | |
| 4-558, gnl|echTel1|scaffold_291948 (45721-46236) | |
| 4-558, gnl|hg17|chr17 (39467923-39468468) | |
| 4-558, gnl|Hg17|chr17 (39467960-39468512) | |
| 4-558, gnl|hg17|chr8 (35501052-35501597) | |
| 4-558, gnl|loxAfr1|scaffold_4197 (26932-27478) | |
| 4-558, gnl|loxAfr1|scaffold_4197 (26932-27478) | |
| 4-558, gnl|mm7|chr11 (102271968-102272491) | |
| 4-558, gnl|mm7|chr11 (102271968-102272491) | |
| 4-558, gnl|Mm7|chr11 (102272002-102272535) | |
| 4-558, gnl|monDom2|scaffold_18 (42783243-42782683) | |
| 4-558, gnl|monDom2|scaffold_18 (42783243-42782683) | |
| 4-558, gnl|oryCun1|scaffold_87458 (1091-1635) | |
| 4-558, gnl|oryCun1|scaffold_87458 (1091-1635) | |
| 4-558, gnl|panTro1|chr19 (42653512-42654058) | |
| 4-558, gnl|panTro1|chr19 (42653512-42654058) | |
| 4-558, gnl|rheMac2|chr14 (30133692-30133151) | |
| 4-558, gnl|rheMac2|chr16 (54110432-54110972) | |
| 4-558, gnl|rn3|chr10 (91246285-91246807) | |
| 4-558, gnl|rn3|chr10 (91246285-91246807) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) |