Non-Coding RNA Search

rfty529b_g10.y1

Sequence:


               
               AGTACCAAAAGGAAACCAGTTCTGCAGAAAAGAAAGCAGAAGGGGTTTATACAAAGTGCC
AGGAAGCAACTGCTCATTTCTGCTGTTCCAGCTATCCTAATTCTCCATCTTAAAAGATTT
CATCAGGCTGGCTTGAGTCTTCGCAAAGTAAACAGACATGTGGATTTTCCACTTACGCTT
GATTTAGCACCATTCTGTTCTGCCACTTGTAAGAATGTATGTGTGGGTGATAAAGTTCTC
TATGGTCTGTATGGCGTAGTAGAACACAGTGGCTCAATGAGAGGAGGTCACTACACTGCT
TATGTGAAAGTGAGAACACCCTCCAGGAAATTATTGGAACATATCACTGGAAAGAAAAAT
ATACCAGGTTTGAAAGAACCTGATAGTGAATCAGCAGTCCAGTGGGTCCATGTTAGTGAC
ACTTATGTGCAGGTGGTTCCAGAATCAAGAGCACTAAGTGCACAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACCAAAAGGAAACCAGTTCTGCAGAAAAGAAAGCAGAAGGGGTTTATACAAAGTGCC
AGGAAGCAACTGCTCATTTCTGCTGTTCCAGCTATCCTAATTCTCCATCTTAAAAGATTT
CATCAGGCTGGCTTGAGTCTTCGCAAAGTAAACAGACATGTGGATTTTCCACTTACGCTT
GATTTAGCACCATTCTGTTCTGCCACTTGTAAGAATGTATGTGTGGGTGATAAAGTTCTC
TATGGTCTGTATGGCGTAGTAGAACACAGTGGCTCAATGAGAGGAGGTCACTACACTGCT
TATGTGAAAGTGAGAACACCCTCCAGGAAATTATTGGAACATATCACTGGAAAGAAAAAT
ATACCAGGTTTGAAAGAACCTGATAGTGAATCAGCAGTCCAGTGGGTCCATGTTAGTGAC
ACTTATGTGCAGGTGGTTCCAGAATCAAGAGCACTAAGTGCACAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61814068|ref|XP_603392.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61814068|ref|XP_603392.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               211-369, + strand, RNAz p=0.764426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               211-369, + strand, RNAz p=0.764426

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               20-127, gnl|bosTau2|chr9 (33732668-33732562)
               

               
               20-127, gnl|canFam2|chr12 (60648459-60648569)
               

               
               20-127, gnl|echTel1|scaffold_234394 (591-487)
               

               
               20-127, gnl|fr1|chrUn (260851573-260851680)
               

               
               20-127, gnl|galGal2|chr3 (69837526-69837390)
               

               
               20-127, gnl|hg17|chr6 (99998158-99998265)
               

               
               20-127, gnl|Hg17|chr6 (99998267-99998161)
               

               
               20-127, gnl|loxAfr1|scaffold_14795 (20853-20745)
               

               
               20-127, gnl|mm7|chr4 (21829916-21829807)
               

               
               20-127, gnl|Mm7|chr4 (21829803-21829909)
               

               
               20-127, gnl|monDom2|scaffold_0 (124397146-124397037)
               

               
               20-127, gnl|oryCun1|scaffold_204232 (91144-91036)
               

               
               20-127, gnl|panTro1|chr5 (101985226-101985333)
               

               
               20-127, gnl|rheMac2|chr4 (95386814-95386921)
               

               
               20-127, gnl|rn3|chr5 (36580281-36580172)
               

               
               20-127, gnl|tetNig1|chr8 (1403573-1403680)
               

               
               20-127, gnl|xenTro1|scaffold_81 (1426342-1426451)
               


               
               211-372, gnl|bosTau2|chr9 (33725325-33725164)
               

               
               211-372, gnl|Hg17|chr6 (99991999-99991838)
               

               
               211-372, gnl|Mm7|chr4 (21835818-21835979)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-127, gnl|bosTau2|chr9 (33732668-33732562)
               

               
               20-127, gnl|canFam2|chr12 (60648459-60648569)
               

               
               20-127, gnl|echTel1|scaffold_234394 (591-487)
               

               
               20-127, gnl|fr1|chrUn (260851573-260851680)
               

               
               20-127, gnl|galGal2|chr3 (69837526-69837390)
               

               
               20-127, gnl|hg17|chr6 (99998158-99998265)
               

               
               20-127, gnl|Hg17|chr6 (99998267-99998161)
               

               
               20-127, gnl|loxAfr1|scaffold_14795 (20853-20745)
               

               
               20-127, gnl|mm7|chr4 (21829916-21829807)
               

               
               20-127, gnl|Mm7|chr4 (21829803-21829909)
               

               
               20-127, gnl|monDom2|scaffold_0 (124397146-124397037)
               

               
               20-127, gnl|oryCun1|scaffold_204232 (91144-91036)
               

               
               20-127, gnl|panTro1|chr5 (101985226-101985333)
               

               
               20-127, gnl|rheMac2|chr4 (95386814-95386921)
               

               
               20-127, gnl|rn3|chr5 (36580281-36580172)
               

               
               20-127, gnl|tetNig1|chr8 (1403573-1403680)
               

               
               20-127, gnl|xenTro1|scaffold_81 (1426342-1426451)
               


               
               211-372, gnl|bosTau2|chr9 (33725325-33725164)
               

               
               211-372, gnl|Hg17|chr6 (99991999-99991838)
               

               
               211-372, gnl|Mm7|chr4 (21835818-21835979)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	20-127, gnl\|bosTau2\|chr9 (33732668-33732562)
	20-127, gnl\|canFam2\|chr12 (60648459-60648569)
	20-127, gnl\|echTel1\|scaffold_234394 (591-487)
	20-127, gnl\|fr1\|chrUn (260851573-260851680)
	20-127, gnl\|galGal2\|chr3 (69837526-69837390)
	20-127, gnl\|hg17\|chr6 (99998158-99998265)
	20-127, gnl\|Hg17\|chr6 (99998267-99998161)
	20-127, gnl\|loxAfr1\|scaffold_14795 (20853-20745)
	20-127, gnl\|mm7\|chr4 (21829916-21829807)
	20-127, gnl\|Mm7\|chr4 (21829803-21829909)
	20-127, gnl\|monDom2\|scaffold_0 (124397146-124397037)
	20-127, gnl\|oryCun1\|scaffold_204232 (91144-91036)
	20-127, gnl\|panTro1\|chr5 (101985226-101985333)
	20-127, gnl\|rheMac2\|chr4 (95386814-95386921)
	20-127, gnl\|rn3\|chr5 (36580281-36580172)
	20-127, gnl\|tetNig1\|chr8 (1403573-1403680)
	20-127, gnl\|xenTro1\|scaffold_81 (1426342-1426451)

	211-372, gnl\|bosTau2\|chr9 (33725325-33725164)
	211-372, gnl\|Hg17\|chr6 (99991999-99991838)
	211-372, gnl\|Mm7\|chr4 (21835818-21835979)