Non-Coding RNA Search

rfty532b_i19.y1

Sequence:


               
               AAATTCTATGACGTGTGGGGCCAACAGCTCTATCATTGGCTGGAATTGATGGAGTCAATC
AATCACGATTGCGTCGTAGTGTCATGGGATTGGCTGTCGCTGTTTCGATTCTTTCTCTAC
TCCCCTCCCACGGGGAGTAGTCTCGCCGGGTTTAAGCGAGAGGTCGCGCCGGAAAAGCCC
AGGCCGAATGAGATTTAAGGTCGGGGAGGAGTGGAGCAAGAGCGCGCATGCGTAGATGGT
CAGAGCCGCCTTTCAGGCCCTGGCTTCCCTGTCGATCTTCGGTCCGGCGCGGAAGCCCTA
GATGACGTCAATCCTCGATTCCCATGGTAACCCGGAACCGAGGGACGGGGGAGGGGCTGG
CGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTCTATGACGTGTGGGGCCAACAGCTCTATCATTGGCTGGAATTGATGGAGTCAATC
AATCACGATTGCGTCGTAGTGTCATGGGATTGGCTGTCGCTGTTTCGATTCTTTCTCTAC
TCCCCTCCCACGGGGAGTAGTCTCGCCGGGTTTAAGCGAGAGGTCGCGCCGGAAAAGCCC
AGGCCGAATGAGATTTAAGGTCGGGGAGGAGTGGAGCAAGAGCGCGCATGCGTAGATGGT
CAGAGCCGCCTTTCAGGCCCTGGCTTCCCTGTCGATCTTCGGTCCGGCGCGGAAGCCCTA
GATGACGTCAATCCTCGATTCCCATGGTAACCCGGAACCGAGGGACGGGGGAGGGGCTGG
CGC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-363, gnl|bosTau2|chr29 (33928006-33928372)
               

               
               1-363, gnl|canFam2|chr18 (55404706-55404104)
               

               
               1-363, gnl|dasNov1|scaffold_12601 (27050-27659)
               

               
               1-363, gnl|echTel1|scaffold_89668 (406-990)
               

               
               1-363, gnl|hg17|chr11 (64302678-64303296)
               

               
               1-363, gnl|Hg17|chr11 (64302864-64303234)
               

               
               1-363, gnl|loxAfr1|scaffold_164516 (1088-471)
               

               
               1-363, gnl|mm7|chr19 (6258644-6258104)
               

               
               1-363, gnl|Mm7|chr19 (6258463-6258166)
               

               
               1-363, gnl|panTro1|chr9 (65520646-65521262)
               

               
               1-363, gnl|rheMac2|chr14 (9678252-9677638)
               

               
               1-363, gnl|rn3|chr1 (209304752-209304221)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-363, gnl|bosTau2|chr29 (33928006-33928372)
               

               
               1-363, gnl|canFam2|chr18 (55404706-55404104)
               

               
               1-363, gnl|dasNov1|scaffold_12601 (27050-27659)
               

               
               1-363, gnl|echTel1|scaffold_89668 (406-990)
               

               
               1-363, gnl|hg17|chr11 (64302678-64303296)
               

               
               1-363, gnl|Hg17|chr11 (64302864-64303234)
               

               
               1-363, gnl|loxAfr1|scaffold_164516 (1088-471)
               

               
               1-363, gnl|mm7|chr19 (6258644-6258104)
               

               
               1-363, gnl|Mm7|chr19 (6258463-6258166)
               

               
               1-363, gnl|panTro1|chr9 (65520646-65521262)
               

               
               1-363, gnl|rheMac2|chr14 (9678252-9677638)
               

               
               1-363, gnl|rn3|chr1 (209304752-209304221)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	1-363, gnl\|bosTau2\|chr29 (33928006-33928372)
	1-363, gnl\|canFam2\|chr18 (55404706-55404104)
	1-363, gnl\|dasNov1\|scaffold_12601 (27050-27659)
	1-363, gnl\|echTel1\|scaffold_89668 (406-990)
	1-363, gnl\|hg17\|chr11 (64302678-64303296)
	1-363, gnl\|Hg17\|chr11 (64302864-64303234)
	1-363, gnl\|loxAfr1\|scaffold_164516 (1088-471)
	1-363, gnl\|mm7\|chr19 (6258644-6258104)
	1-363, gnl\|Mm7\|chr19 (6258463-6258166)
	1-363, gnl\|panTro1\|chr9 (65520646-65521262)
	1-363, gnl\|rheMac2\|chr14 (9678252-9677638)
	1-363, gnl\|rn3\|chr1 (209304752-209304221)