Non-Coding RNA Search

rfty538b_g9.y1

Sequence:


               
               GTTTATCACAAAAGATCTGATGCGCGACCACAAGGCCTGTCTGCCTGATGCCAAGACCCA
ACGCCTGTTCTTTAAGTGGCAGCAGGGACATCAGCTGGCAATCATCAGTAGGCATCCAGG
ATCCAGAATAACTTTTCAGCATATTCTGAGCTATGACACCGTGGTGCAGACAACCGGAGA
CTCATGGCACATACCTTATGATGAAGACCTGGTGGAAAGATACTCCTACGAGGTGCCAAC
CAAATGGCTTTGCCTTCACCGGAAGACATAGAGACTTACCGTTGTGCTAAACTTGTATCT
CCTGGTTGGCCTCAGAGCTCTTAAGTTGATGCTTCTTTATTTTTTTTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTATCACAAAAGATCTGATGCGCGACCACAAGGCCTGTCTGCCTGATGCCAAGACCCA
ACGCCTGTTCTTTAAGTGGCAGCAGGGACATCAGCTGGCAATCATCAGTAGGCATCCAGG
ATCCAGAATAACTTTTCAGCATATTCTGAGCTATGACACCGTGGTGCAGACAACCGGAGA
CTCATGGCACATACCTTATGATGAAGACCTGGTGGAAAGATACTCCTACGAGGTGCCAAC
CAAATGGCTTTGCCTTCACCGGAAGACATAGAGACTTACCGTTGTGCTAAACTTGTATCT
CCTGGTTGGCCTCAGAGCTCTTAAGTTGATGCTTCTTTATTTTTTTTATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61810151|ref|XP_588247.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61810151|ref|XP_588247.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               183-337, - strand, RNAz p=0.967002
               

               
               216-337, - strand, RNAz p=0.997694

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-337, - strand, RNAz p=0.967002
               

               
               216-337, - strand, RNAz p=0.997694

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               137-337, gnl|bosTau2|chr21 (30025197-30025407)
               

               
               137-337, gnl|canFam2|chr8 (17011168-17011358)
               

               
               137-337, gnl|danRer3|chr17 (6447551-6447693)
               

               
               137-337, gnl|dasNov1|scaffold_55478 (2847-2679)
               

               
               137-337, gnl|echTel1|scaffold_268373 (3180-3373)
               

               
               137-337, gnl|fr1|chrUn (158068120-158067970)
               

               
               137-337, gnl|hg17|chr14 (34812334-34812527)
               

               
               137-337, gnl|Hg17|chr14 (34812389-34812602)
               

               
               137-337, gnl|loxAfr1|scaffold_41451 (3903-3708)
               

               
               137-337, gnl|mm7|chr12 (53308244-53308421)
               

               
               137-337, gnl|Mm7|chr12 (53308289-53308484)
               

               
               137-337, gnl|monDom2|scaffold_73 (3060317-3060140)
               

               
               137-337, gnl|oryCun1|scaffold_214142 (2370-2553)
               

               
               137-337, gnl|panTro1|chr15 (33973253-33973446)
               

               
               137-337, gnl|rheMac2|chr7 (98224739-98224932)
               

               
               137-337, gnl|rn3|chr6 (75635992-75636170)
               

               
               137-337, gnl|tetNig1|chr10 (2377436-2377593)
               

               
               137-337, gnl|xenTro1|scaffold_117 (772071-771876)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-337, gnl|bosTau2|chr21 (30025197-30025407)
               

               
               137-337, gnl|canFam2|chr8 (17011168-17011358)
               

               
               137-337, gnl|danRer3|chr17 (6447551-6447693)
               

               
               137-337, gnl|dasNov1|scaffold_55478 (2847-2679)
               

               
               137-337, gnl|echTel1|scaffold_268373 (3180-3373)
               

               
               137-337, gnl|fr1|chrUn (158068120-158067970)
               

               
               137-337, gnl|hg17|chr14 (34812334-34812527)
               

               
               137-337, gnl|Hg17|chr14 (34812389-34812602)
               

               
               137-337, gnl|loxAfr1|scaffold_41451 (3903-3708)
               

               
               137-337, gnl|mm7|chr12 (53308244-53308421)
               

               
               137-337, gnl|Mm7|chr12 (53308289-53308484)
               

               
               137-337, gnl|monDom2|scaffold_73 (3060317-3060140)
               

               
               137-337, gnl|oryCun1|scaffold_214142 (2370-2553)
               

               
               137-337, gnl|panTro1|chr15 (33973253-33973446)
               

               
               137-337, gnl|rheMac2|chr7 (98224739-98224932)
               

               
               137-337, gnl|rn3|chr6 (75635992-75636170)
               

               
               137-337, gnl|tetNig1|chr10 (2377436-2377593)
               

               
               137-337, gnl|xenTro1|scaffold_117 (772071-771876)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fty (0.17584)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	183-337, - strand, RNAz p=0.967002
	216-337, - strand, RNAz p=0.997694

	137-337, gnl\|bosTau2\|chr21 (30025197-30025407)
	137-337, gnl\|canFam2\|chr8 (17011168-17011358)
	137-337, gnl\|danRer3\|chr17 (6447551-6447693)
	137-337, gnl\|dasNov1\|scaffold_55478 (2847-2679)
	137-337, gnl\|echTel1\|scaffold_268373 (3180-3373)
	137-337, gnl\|fr1\|chrUn (158068120-158067970)
	137-337, gnl\|hg17\|chr14 (34812334-34812527)
	137-337, gnl\|Hg17\|chr14 (34812389-34812602)
	137-337, gnl\|loxAfr1\|scaffold_41451 (3903-3708)
	137-337, gnl\|mm7\|chr12 (53308244-53308421)
	137-337, gnl\|Mm7\|chr12 (53308289-53308484)
	137-337, gnl\|monDom2\|scaffold_73 (3060317-3060140)
	137-337, gnl\|oryCun1\|scaffold_214142 (2370-2553)
	137-337, gnl\|panTro1\|chr15 (33973253-33973446)
	137-337, gnl\|rheMac2\|chr7 (98224739-98224932)
	137-337, gnl\|rn3\|chr6 (75635992-75636170)
	137-337, gnl\|tetNig1\|chr10 (2377436-2377593)
	137-337, gnl\|xenTro1\|scaffold_117 (772071-771876)