Non-Coding RNA Search

rgul0101_g4.y1

Sequence:


               
               GCCTAGTAGCTGACAGACTTCTTCAGTTTTCCATAATTCAGCAAAATGACTGGCTTCGTG
CCCTCTCAGATAATTCAGTACATTGTGTGATTGGCATGTGGTCATGGACCATAGTCATTG
GAATCAAGAAGAAGACTGACTTTGGAGAAATCATTTTAGCTGGATTTTTAGCCTCTATTA
TTGATATAGACCACTTTTTCCTAGCTGGATCCCTATCTTTAAAGGCTGCTCTGACTCTTC
CACGAAGACCCTTCCTTCACTGTTCTACTGTGATACCCATTGTGGTTCTGACTGTGAAGT
TTACTATGCACCTTTTCAAGCTCAAAGACTCCTGGTGCTTTCTTCCCTGGATGTTATTTA
TATCCTGGACCTCACACCATGTCCGAGATGGAATTCGCCACGGCTTGTGGATATGCCCTT
TTGGAAAAACTTCTCCTTTGCCATTCTGGCTTTATGTAATAATTACATCATCTTTACCTC
ATATCTGTTCATTCGTTATGTATTTCACAGGGACCAGACAAGTGATGTCTTCAAAACACG
GAATTCATATTGATGTCTGAGATAACCATGTGACAGTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTAGTAGCTGACAGACTTCTTCAGTTTTCCATAATTCAGCAAAATGACTGGCTTCGTG
CCCTCTCAGATAATTCAGTACATTGTGTGATTGGCATGTGGTCATGGACCATAGTCATTG
GAATCAAGAAGAAGACTGACTTTGGAGAAATCATTTTAGCTGGATTTTTAGCCTCTATTA
TTGATATAGACCACTTTTTCCTAGCTGGATCCCTATCTTTAAAGGCTGCTCTGACTCTTC
CACGAAGACCCTTCCTTCACTGTTCTACTGTGATACCCATTGTGGTTCTGACTGTGAAGT
TTACTATGCACCTTTTCAAGCTCAAAGACTCCTGGTGCTTTCTTCCCTGGATGTTATTTA
TATCCTGGACCTCACACCATGTCCGAGATGGAATTCGCCACGGCTTGTGGATATGCCCTT
TTGGAAAAACTTCTCCTTTGCCATTCTGGCTTTATGTAATAATTACATCATCTTTACCTC
ATATCTGTTCATTCGTTATGTATTTCACAGGGACCAGACAAGTGATGTCTTCAAAACACG
GAATTCATATTGATGTCTGAGATAACCATGTGACAGTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49258123|gb|AAH73852.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49258123|gb|AAH73852.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               302-421, - strand, RNAz p=0.78021

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               302-421, - strand, RNAz p=0.78021

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               223-580, gnl|bosTau2|chr20 (16980319-16980676)
               

               
               223-580, gnl|Hg17|chr5 (43482418-43482065)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               223-580, gnl|bosTau2|chr20 (16980319-16980676)
               

               
               223-580, gnl|Hg17|chr5 (43482418-43482065)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	223-580, gnl\|bosTau2\|chr20 (16980319-16980676)
	223-580, gnl\|Hg17\|chr5 (43482418-43482065)