Non-Coding RNA Search

rgul0106_p13.y1

Sequence:


               
               ATTTAATAagtaagtggcagagcctggatttgaatctaggtaatctggctccagagtctg
tgctcttaaccactatACTGTTTAATTCCATGTAAGAAAAAAACCAATGTGGACTGTATA
GAATTGATTTCAAACTATTATTAAAACTTTGAATATCAATTAAATAACCGTAAATCAGAT
CACATTTACAGGTTATACTTTACTTTTTTGTATGTGTGTTTCCTTTTCAGTTTGTCTCCC
AATCTAACTGTCAGCAGTTCCTGAACACTGTTTGGTTTGGACAAATGTCAGGTTATCGAC
GTAAGCCTACCTGTAAGAAGATTATGACTGTTTTGACAGTCGGCATCTTTTGGCCAGTTT
TGTCACTTTGTTATTTGATAGCTCCCAAATCTCAGTTTGGCAGAATTATTCACACACCTT
TTATGAAATTTATTATTCATGGAGCATCATATTTCACATTCCTGCTATTGCTGAACCTAT
ACTCTCTTGTCTACAATGAAGATAAGAAAAACACAATGGGGCCAGCCCTTGAAAGAATAG
ACTATCTTCTTATACTGTGGATTATTGGAATGATTTGGTCAGACATTAAAAGACTCTGGT
ATGAAGGGTTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAATAagtaagtggcagagcctggatttgaatctaggtaatctggctccagagtctg
tgctcttaaccactatACTGTTTAATTCCATGTAAGAAAAAAACCAATGTGGACTGTATA
GAATTGATTTCAAACTATTATTAAAACTTTGAATATCAATTAAATAACCGTAAATCAGAT
CACATTTACAGGTTATACTTTACTTTTTTGTATGTGTGTTTCCTTTTCAGTTTGTCTCCC
AATCTAACTGTCAGCAGTTCCTGAACACTGTTTGGTTTGGACAAATGTCAGGTTATCGAC
GTAAGCCTACCTGTAAGAAGATTATGACTGTTTTGACAGTCGGCATCTTTTGGCCAGTTT
TGTCACTTTGTTATTTGATAGCTCCCAAATCTCAGTTTGGCAGAATTATTCACACACCTT
TTATGAAATTTATTATTCATGGAGCATCATATTTCACATTCCTGCTATTGCTGAACCTAT
ACTCTCTTGTCTACAATGAAGATAAGAAAAACACAATGGGGCCAGCCCTTGAAAGAATAG
ACTATCTTCTTATACTGTGGATTATTGGAATGATTTGGTCAGACATTAAAAGACTCTGGT
ATGAAGGGTTGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6L6S7_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6L6S7_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-112, - strand, RNAz p=0.802546
               

               
               304-463, + strand, RNAz p=0.850015

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-112, - strand, RNAz p=0.802546
               

               
               304-463, + strand, RNAz p=0.850015

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-598, gnl|bosTau2|chr1 (80576578-80575985)
               

               
               1-598, gnl|Hg17|chr3 (143986012-143986610)
               

               
               1-598, gnl|Mm7|chr9 (95367521-95366934)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chr1 (80576578-80575985)
               

               
               1-598, gnl|Hg17|chr3 (143986012-143986610)
               

               
               1-598, gnl|Mm7|chr9 (95367521-95366934)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	1-112, - strand, RNAz p=0.802546
	304-463, + strand, RNAz p=0.850015

	1-598, gnl\|bosTau2\|chr1 (80576578-80575985)
	1-598, gnl\|Hg17\|chr3 (143986012-143986610)
	1-598, gnl\|Mm7\|chr9 (95367521-95366934)