Non-Coding RNA Search

rgul0107_l21.y1

Sequence:


               
               GAGAGAGAGAGGTGCATACCGCCCACATTATTGTATATTCCCTGAGAGCTGAATTACAGC
TGAATTAAGCCTCTGTTGGGTGATAATGACATAGTCAACGAGCCTGAAGAGCTTCAGCCT
TTGATAATGGGGACAGGGAGATGACTGCCTGCTTCCCTGGCCATGCCACCCTCTCCTCTG
ATTGCCCGCTTCTGCACTGGCCGCAGCCCTCTGAGCCTCGCCGTGCTTGGGGGAGCAGGG
CTGGGAAGGAGGTGGGCAGGTGGACCTAACAGAGAGCTGCTCCCTGGCCGCCTCTTCCCT
TCCAGGCTTGGACTTTCAGACCCAGATGGCCCTTGGGTGCTCCCGCACCTGCCCACTCGC
TCCGGGTTGGAAAACTACATTAATGGCTTTGTTATACCAAAGTCTAAATAGTGACAGCGA
CTCATCCTGGCAGTGAATGAGCCATGGGAATGGCTCTCCCTTTATCCACTGAGGAGGTTG
ACAGTGTTCTTATCAAGCTCAGCTCACAGCTGAGGACTGGAGCTCATAGGTGACGGGTGT
GCAGCAGCTACGGGTTGAGCTGAGCTGAAGCCAGGCTCATTTCTCCTCCTCTTCCTCCTG
TCCTCCCACTATCACGTCTTTCTCCCCTGCCTGCCTCTCTCACAGTCATCCGCCCGGCCC
CAGCTCTGTCCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAGAGAGGTGCATACCGCCCACATTATTGTATATTCCCTGAGAGCTGAATTACAGC
TGAATTAAGCCTCTGTTGGGTGATAATGACATAGTCAACGAGCCTGAAGAGCTTCAGCCT
TTGATAATGGGGACAGGGAGATGACTGCCTGCTTCCCTGGCCATGCCACCCTCTCCTCTG
ATTGCCCGCTTCTGCACTGGCCGCAGCCCTCTGAGCCTCGCCGTGCTTGGGGGAGCAGGG
CTGGGAAGGAGGTGGGCAGGTGGACCTAACAGAGAGCTGCTCCCTGGCCGCCTCTTCCCT
TCCAGGCTTGGACTTTCAGACCCAGATGGCCCTTGGGTGCTCCCGCACCTGCCCACTCGC
TCCGGGTTGGAAAACTACATTAATGGCTTTGTTATACCAAAGTCTAAATAGTGACAGCGA
CTCATCCTGGCAGTGAATGAGCCATGGGAATGGCTCTCCCTTTATCCACTGAGGAGGTTG
ACAGTGTTCTTATCAAGCTCAGCTCACAGCTGAGGACTGGAGCTCATAGGTGACGGGTGT
GCAGCAGCTACGGGTTGAGCTGAGCTGAAGCCAGGCTCATTTCTCCTCCTCTTCCTCCTG
TCCTCCCACTATCACGTCTTTCTCCCCTGCCTGCCTCTCTCACAGTCATCCGCCCGGCCC
CAGCTCTGTCCTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               385-497, - strand, RNAz p=0.915503

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-497, - strand, RNAz p=0.915503

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-244, gnl|bosTau2|chr29 (12428541-12428302)
               

               
               1-244, gnl|Hg17|chr11 (78450333-78450089)
               

               
               1-244, gnl|Mm7|chr7 (92587287-92587520)
               


               
               385-572, gnl|bosTau2|chr29 (12427961-12427777)
               

               
               385-572, gnl|Hg17|chr11 (78449941-78449768)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-244, gnl|bosTau2|chr29 (12428541-12428302)
               

               
               1-244, gnl|Hg17|chr11 (78450333-78450089)
               

               
               1-244, gnl|Mm7|chr7 (92587287-92587520)
               


               
               385-572, gnl|bosTau2|chr29 (12427961-12427777)
               

               
               385-572, gnl|Hg17|chr11 (78449941-78449768)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	1-244, gnl\|bosTau2\|chr29 (12428541-12428302)
	1-244, gnl\|Hg17\|chr11 (78450333-78450089)
	1-244, gnl\|Mm7\|chr7 (92587287-92587520)

	385-572, gnl\|bosTau2\|chr29 (12427961-12427777)
	385-572, gnl\|Hg17\|chr11 (78449941-78449768)