Non-Coding RNA Search

rgul0108_k10.y1

Sequence:


               
               TAGACTGCGAAGAGGCCAGATCCCTGGGGCCTACCAGCATTTTGAGGTCATGGAGGAGGC
CCAAGAAAGGAACCTCCACTTGTGGCCATTGAGGCCTCCCACCTGTTCAAATGCATCTGT
GGTGTTGTGCCGCGTGCTTATAGTTTCATGTGTGCCAGACCTGTCATGACAACCAAGACT
GCAAACTTCTTGTGATCACTCTCCATAAGAGGGTCAGTAAAGAAAGAGCCAAAGTGTGTT
ATTGGTGCCTACAGTGTTGGCATGATCTTTGTTTACTATGTATTTCTTACTCTTCCAAAC
ACAGTGCAGAGTGAATGCTGCCAGGCTATTGGGGGAAATGTAGCTACTTCCTTTCTCAAG
GACTGGCTCTGTGAGTTAGTGAAGAATTCACAAGCTTATTTTACTGGCAGTAAACTGATG
CACAGAGAGATTAACTAATTTATGCACAGCCCACACGGAGTCAATAGCTAGCCTGAGGCC
ACACGGCAGTGTTCAGTACAGTGTGTGCCGATTGCCAGCGTCACCTGGCCTGCTGGCTTT
TTTTTCTTTTTTTTAAATTCTAACACACATGGGTGATCCACTCAGCGCTTTACTGATGGT
CACTCTTAATCCTCACAACACCTCCATGCAAGGGCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGACTGCGAAGAGGCCAGATCCCTGGGGCCTACCAGCATTTTGAGGTCATGGAGGAGGC
CCAAGAAAGGAACCTCCACTTGTGGCCATTGAGGCCTCCCACCTGTTCAAATGCATCTGT
GGTGTTGTGCCGCGTGCTTATAGTTTCATGTGTGCCAGACCTGTCATGACAACCAAGACT
GCAAACTTCTTGTGATCACTCTCCATAAGAGGGTCAGTAAAGAAAGAGCCAAAGTGTGTT
ATTGGTGCCTACAGTGTTGGCATGATCTTTGTTTACTATGTATTTCTTACTCTTCCAAAC
ACAGTGCAGAGTGAATGCTGCCAGGCTATTGGGGGAAATGTAGCTACTTCCTTTCTCAAG
GACTGGCTCTGTGAGTTAGTGAAGAATTCACAAGCTTATTTTACTGGCAGTAAACTGATG
CACAGAGAGATTAACTAATTTATGCACAGCCCACACGGAGTCAATAGCTAGCCTGAGGCC
ACACGGCAGTGTTCAGTACAGTGTGTGCCGATTGCCAGCGTCACCTGGCCTGCTGGCTTT
TTTTTCTTTTTTTTAAATTCTAACACACATGGGTGATCCACTCAGCGCTTTACTGATGGT
CACTCTTAATCCTCACAACACCTCCATGCAAGGGCAAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               159-271, - strand, RNAz p=0.971238
               

               
               306-425, + strand, RNAz p=0.709729

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-271, - strand, RNAz p=0.971238
               

               
               306-425, + strand, RNAz p=0.709729

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               170-296, - strand, RNAmicro p=0.996415
               

               
               241-359, + strand, RNAmicro p=0.902716

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               170-296, - strand, RNAmicro p=0.996415
               

               
               241-359, + strand, RNAmicro p=0.902716

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-638, gnl|bosTau2|chr16 (42416597-42417224)
               

               
               1-638, gnl|Hg17|chr1 (175358620-175357680)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-638, gnl|bosTau2|chr16 (42416597-42417224)
               

               
               1-638, gnl|Hg17|chr1 (175358620-175357680)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	159-271, - strand, RNAz p=0.971238
	306-425, + strand, RNAz p=0.709729

	170-296, - strand, RNAmicro p=0.996415
	241-359, + strand, RNAmicro p=0.902716

	1-638, gnl\|bosTau2\|chr16 (42416597-42417224)
	1-638, gnl\|Hg17\|chr1 (175358620-175357680)