Non-Coding RNA Search

rgul0115_e3.y1

Sequence:


               
               GAACTCCATGTATGCTCAGATTTTATCTTCTGAAAGGTTTGGAGAATCCCACAGATTCCA
GAGTCATAGAAATCCCAGCGTCTGAAGTGCTAGTATACAAGCAGCTTTATTCACCGGTTT
TGCAATACCTCCAGCAGGGCAGTTTTTTTGTTTTTTTTTTTTTTGTTTTTTTTCCCCAAA
CTTACTGTTATCAGCATCTCCTGGGGGATGTTTTAAAATCCAGGTCCTTGAATTTAATGA
TTCAGAATGTCTGGACCTGGTCACTTGCTATCTCTGTTCTTAAATCCCTCCCTGAGTGAT
TGTACAGCAAAGTCAGATCCAGAATTACTGACCCAGATAAAAATCACCAACTGTGCACTG
TCAGGATGTGGCCTGTGGTCAATCCTCCGTGTCCCCCTAGGTACATGGCCAGCCTCAATA
ACATTTTTTTTCTTGCTTTTTGGGGCGGCACTCGCGGCATATGGACATTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTCCATGTATGCTCAGATTTTATCTTCTGAAAGGTTTGGAGAATCCCACAGATTCCA
GAGTCATAGAAATCCCAGCGTCTGAAGTGCTAGTATACAAGCAGCTTTATTCACCGGTTT
TGCAATACCTCCAGCAGGGCAGTTTTTTTGTTTTTTTTTTTTTTGTTTTTTTTCCCCAAA
CTTACTGTTATCAGCATCTCCTGGGGGATGTTTTAAAATCCAGGTCCTTGAATTTAATGA
TTCAGAATGTCTGGACCTGGTCACTTGCTATCTCTGTTCTTAAATCCCTCCCTGAGTGAT
TGTACAGCAAAGTCAGATCCAGAATTACTGACCCAGATAAAAATCACCAACTGTGCACTG
TCAGGATGTGGCCTGTGGTCAATCCTCCGTGTCCCCCTAGGTACATGGCCAGCCTCAATA
ACATTTTTTTTCTTGCTTTTTGGGGCGGCACTCGCGGCATATGGACATTCCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-275, - strand, RNAz p=0.823648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-275, - strand, RNAz p=0.823648

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               176-428, gnl|bosTau2|chr27 (23137871-23138122)
               

               
               176-428, gnl|canFam2|chr16 (28159506-28159048)
               

               
               176-428, gnl|dasNov1|scaffold_7767 (48186-47757)
               

               
               176-428, gnl|hg17|chr8 (40136953-40137425)
               

               
               176-428, gnl|Hg17|chr8 (40137232-40137485)
               

               
               176-428, gnl|loxAfr1|scaffold_2843 (74232-74702)
               

               
               176-428, gnl|mm7|chr8 (23218008-23217635)
               

               
               176-428, gnl|Mm7|chr8 (23217815-23217574)
               

               
               176-428, gnl|oryCun1|scaffold_185945 (77849-78313)
               

               
               176-428, gnl|panTro1|chr7 (41432354-41432826)
               

               
               176-428, gnl|rheMac2|chr8 (40708953-40709425)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-428, gnl|bosTau2|chr27 (23137871-23138122)
               

               
               176-428, gnl|canFam2|chr16 (28159506-28159048)
               

               
               176-428, gnl|dasNov1|scaffold_7767 (48186-47757)
               

               
               176-428, gnl|hg17|chr8 (40136953-40137425)
               

               
               176-428, gnl|Hg17|chr8 (40137232-40137485)
               

               
               176-428, gnl|loxAfr1|scaffold_2843 (74232-74702)
               

               
               176-428, gnl|mm7|chr8 (23218008-23217635)
               

               
               176-428, gnl|Mm7|chr8 (23217815-23217574)
               

               
               176-428, gnl|oryCun1|scaffold_185945 (77849-78313)
               

               
               176-428, gnl|panTro1|chr7 (41432354-41432826)
               

               
               176-428, gnl|rheMac2|chr8 (40708953-40709425)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	176-428, gnl\|bosTau2\|chr27 (23137871-23138122)
	176-428, gnl\|canFam2\|chr16 (28159506-28159048)
	176-428, gnl\|dasNov1\|scaffold_7767 (48186-47757)
	176-428, gnl\|hg17\|chr8 (40136953-40137425)
	176-428, gnl\|Hg17\|chr8 (40137232-40137485)
	176-428, gnl\|loxAfr1\|scaffold_2843 (74232-74702)
	176-428, gnl\|mm7\|chr8 (23218008-23217635)
	176-428, gnl\|Mm7\|chr8 (23217815-23217574)
	176-428, gnl\|oryCun1\|scaffold_185945 (77849-78313)
	176-428, gnl\|panTro1\|chr7 (41432354-41432826)
	176-428, gnl\|rheMac2\|chr8 (40708953-40709425)