Non-Coding RNA Search

rgul0115_g7.y1

Sequence:


               
               TCAGAGTAAGTCTCCATTCACCTGAACTCCTTTCCCCTGGGTCCCTGGTGACTACACATT
CACAGAATACCCATGGCTGAGCACAGGGAAGTCCCTTTCAGTTGTGCCAGACCTTCATAT
GCTCAAAGCAGTGATCTGCAGCTGAGATTAGGACATGAAAACTGAGAAAGAACCTGAGAA
GCATTGGGCATTATCTCATGCTTGACAGCAACTCACTGAAGATGGGAGGCAAAGCTGGAG
GCAGAAGAAAGATACCTTGTGGTCACGAAATTAGAGAAGAGATGAAAAGGAAAAAGAATT
CCTCAGAGGCTCAAAACATCTGTGGCTGCAGTAAAAAGAAAAAAATAGAGAGAGAGAGAA
CTCTTCCATGGTAAGGAAACATGGTAAAGGGTTAAAAATTGGAGAGCTCCCAAATCTTGC
TACAAAGAAGCAAGATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGAGTAAGTCTCCATTCACCTGAACTCCTTTCCCCTGGGTCCCTGGTGACTACACATT
CACAGAATACCCATGGCTGAGCACAGGGAAGTCCCTTTCAGTTGTGCCAGACCTTCATAT
GCTCAAAGCAGTGATCTGCAGCTGAGATTAGGACATGAAAACTGAGAAAGAACCTGAGAA
GCATTGGGCATTATCTCATGCTTGACAGCAACTCACTGAAGATGGGAGGCAAAGCTGGAG
GCAGAAGAAAGATACCTTGTGGTCACGAAATTAGAGAAGAGATGAAAAGGAAAAAGAATT
CCTCAGAGGCTCAAAACATCTGTGGCTGCAGTAAAAAGAAAAAAATAGAGAGAGAGAGAA
CTCTTCCATGGTAAGGAAACATGGTAAAGGGTTAAAAATTGGAGAGCTCCCAAATCTTGC
TACAAAGAAGCAAGATAAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               301-399, - strand, RNAz p=0.956587
               

               
               312-437, - strand, RNAz p=0.999984

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               301-399, - strand, RNAz p=0.956587
               

               
               312-437, - strand, RNAz p=0.999984

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               2-437, gnl|bosTau2|chr14 (23754531-23754088)
               

               
               2-437, gnl|canFam2|chr18 (31541901-31540839)
               

               
               2-437, gnl|hg17|chr11 (40460895-40461886)
               

               
               2-437, gnl|Hg17|chr11 (40461134-40461568)
               

               
               2-437, gnl|mm7|chr2 (97119727-97118830)
               

               
               2-437, gnl|panTro1|chr9_random (17136520-17135512)
               

               
               2-437, gnl|rheMac2|chr14 (31488825-31487800)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-437, gnl|bosTau2|chr14 (23754531-23754088)
               

               
               2-437, gnl|canFam2|chr18 (31541901-31540839)
               

               
               2-437, gnl|hg17|chr11 (40460895-40461886)
               

               
               2-437, gnl|Hg17|chr11 (40461134-40461568)
               

               
               2-437, gnl|mm7|chr2 (97119727-97118830)
               

               
               2-437, gnl|panTro1|chr9_random (17136520-17135512)
               

               
               2-437, gnl|rheMac2|chr14 (31488825-31487800)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	301-399, - strand, RNAz p=0.956587
	312-437, - strand, RNAz p=0.999984

	2-437, gnl\|bosTau2\|chr14 (23754531-23754088)
	2-437, gnl\|canFam2\|chr18 (31541901-31540839)
	2-437, gnl\|hg17\|chr11 (40460895-40461886)
	2-437, gnl\|Hg17\|chr11 (40461134-40461568)
	2-437, gnl\|mm7\|chr2 (97119727-97118830)
	2-437, gnl\|panTro1\|chr9_random (17136520-17135512)
	2-437, gnl\|rheMac2\|chr14 (31488825-31487800)