Non-Coding RNA Search

rgul0116_d23.y1

Sequence:


               
               CATTTCCTGATAAGGATACTGGTGCGGGGAGGTTAACTGAGTCTCATGTGATCTTATATT
GGGTGAGTGAGAGAGAAGGATCAAGGCCCACACTTGGCATCCTGGTATGGTGCCCCCTGC
ACTGTGCCAGGCAGCTAACCATGGCTGCCCTGGAGCAGATGGGATGGGCAGTGACACTGG
TTTTGCTACTCATGAGTTAATGAAATAGCTTTTTAAGAGCTCTCTTCAGTCATTAGAATT
TGCCAATGGAGAGTTAAAACTTTCCCCAGTGGCTCTTTCTGTGTAATCAGGGTTCAACGT
TTTCTTAGCATATCACATTACACAAATCATGGAGTGCTCTTGTTTTACACTTCTTACTGC
GTTTGTCTCACTTCTAAGCAATTTCCTCCTCATTTGCATTCATCTTGTATTATTTCTGTC
AAATTGCTTTCAAGGCTACTAATTGTATAAATAATATTCTCTTCCTCAAACTCTATTAAC
TAGCGTTAGCTGTGTGGCACTGGACAGAGTTTATCTCTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTCCTGATAAGGATACTGGTGCGGGGAGGTTAACTGAGTCTCATGTGATCTTATATT
GGGTGAGTGAGAGAGAAGGATCAAGGCCCACACTTGGCATCCTGGTATGGTGCCCCCTGC
ACTGTGCCAGGCAGCTAACCATGGCTGCCCTGGAGCAGATGGGATGGGCAGTGACACTGG
TTTTGCTACTCATGAGTTAATGAAATAGCTTTTTAAGAGCTCTCTTCAGTCATTAGAATT
TGCCAATGGAGAGTTAAAACTTTCCCCAGTGGCTCTTTCTGTGTAATCAGGGTTCAACGT
TTTCTTAGCATATCACATTACACAAATCATGGAGTGCTCTTGTTTTACACTTCTTACTGC
GTTTGTCTCACTTCTAAGCAATTTCCTCCTCATTTGCATTCATCTTGTATTATTTCTGTC
AAATTGCTTTCAAGGCTACTAATTGTATAAATAATATTCTCTTCCTCAAACTCTATTAAC
TAGCGTTAGCTGTGTGGCACTGGACAGAGTTTATCTCTCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               185-297, + strand, RNAz p=0.75616

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-297, + strand, RNAz p=0.75616

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-523, gnl|bosTau2|chr20 (27653554-27653028)
               

               
               1-523, gnl|canFam2|chr4 (79179624-79179227)
               

               
               1-523, gnl|dasNov1|scaffold_63 (64664-64278)
               

               
               1-523, gnl|echTel1|scaffold_282949 (2861-3252)
               

               
               1-523, gnl|hg17|chr5 (31327306-31327695)
               

               
               1-523, gnl|Hg17|chr5 (31327364-31327887)
               

               
               1-523, gnl|loxAfr1|scaffold_2710 (45170-44774)
               

               
               1-523, gnl|mm7|chr15 (13125434-13125028)
               

               
               1-523, gnl|Mm7|chr15 (13125375-13124834)
               

               
               1-523, gnl|oryCun1|scaffold_212140 (142201-141829)
               

               
               1-523, gnl|panTro1|chr4 (86074029-86073640)
               

               
               1-523, gnl|rheMac2|chr6 (31357664-31358053)
               

               
               1-523, gnl|rn3|chr2 (62509609-62509203)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-523, gnl|bosTau2|chr20 (27653554-27653028)
               

               
               1-523, gnl|canFam2|chr4 (79179624-79179227)
               

               
               1-523, gnl|dasNov1|scaffold_63 (64664-64278)
               

               
               1-523, gnl|echTel1|scaffold_282949 (2861-3252)
               

               
               1-523, gnl|hg17|chr5 (31327306-31327695)
               

               
               1-523, gnl|Hg17|chr5 (31327364-31327887)
               

               
               1-523, gnl|loxAfr1|scaffold_2710 (45170-44774)
               

               
               1-523, gnl|mm7|chr15 (13125434-13125028)
               

               
               1-523, gnl|Mm7|chr15 (13125375-13124834)
               

               
               1-523, gnl|oryCun1|scaffold_212140 (142201-141829)
               

               
               1-523, gnl|panTro1|chr4 (86074029-86073640)
               

               
               1-523, gnl|rheMac2|chr6 (31357664-31358053)
               

               
               1-523, gnl|rn3|chr2 (62509609-62509203)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	1-523, gnl\|bosTau2\|chr20 (27653554-27653028)
	1-523, gnl\|canFam2\|chr4 (79179624-79179227)
	1-523, gnl\|dasNov1\|scaffold_63 (64664-64278)
	1-523, gnl\|echTel1\|scaffold_282949 (2861-3252)
	1-523, gnl\|hg17\|chr5 (31327306-31327695)
	1-523, gnl\|Hg17\|chr5 (31327364-31327887)
	1-523, gnl\|loxAfr1\|scaffold_2710 (45170-44774)
	1-523, gnl\|mm7\|chr15 (13125434-13125028)
	1-523, gnl\|Mm7\|chr15 (13125375-13124834)
	1-523, gnl\|oryCun1\|scaffold_212140 (142201-141829)
	1-523, gnl\|panTro1\|chr4 (86074029-86073640)
	1-523, gnl\|rheMac2\|chr6 (31357664-31358053)
	1-523, gnl\|rn3\|chr2 (62509609-62509203)