Non-Coding RNA Search

rgul0120_j16.y1

Sequence:


               
               CAGGATGCCTGCTCTTACTCAACCACATTATGAAAACAGATGGGGTGGTCAGGCCAGGGT
ACCCCAACTTGAGGTCACCAAGATTCTCAGCAGAGGTAGCGCTGCCTCCTAGTGGGGTCC
TCTGGACTAGGAAGGATCCCTTAGGGTCTCGGGTCCAGGGCATTCAGCTCCCCAAACCCA
CCTTGACAGTAGGGTCACCTAGATGTATCCACATATACGCACACACATGGTCAACATCTG
TGACCTGGGGCTGAAAGCAAACCATGGGGACCACTAAGAGGCACAAACAGGCCAGCAGGA
AATAGGGAGATATAAGGGAGTGACAGAACCATGGGGATAACAGTGCAGGGCAATGCTGTG
GGAATGGGGGCAAGGGGGGCTTCCCAGAGGAGGTGACATTGGAGCTGAAGCCTAAATAAC
AAGAAGCCAGCTATTCAGAGATCAAGGGAAGCAGGTTCCAGGCAGAGGGAACAGCACATG
CAAAGGCCCTGAGGCCAGATTGAACCTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGATGCCTGCTCTTACTCAACCACATTATGAAAACAGATGGGGTGGTCAGGCCAGGGT
ACCCCAACTTGAGGTCACCAAGATTCTCAGCAGAGGTAGCGCTGCCTCCTAGTGGGGTCC
TCTGGACTAGGAAGGATCCCTTAGGGTCTCGGGTCCAGGGCATTCAGCTCCCCAAACCCA
CCTTGACAGTAGGGTCACCTAGATGTATCCACATATACGCACACACATGGTCAACATCTG
TGACCTGGGGCTGAAAGCAAACCATGGGGACCACTAAGAGGCACAAACAGGCCAGCAGGA
AATAGGGAGATATAAGGGAGTGACAGAACCATGGGGATAACAGTGCAGGGCAATGCTGTG
GGAATGGGGGCAAGGGGGGCTTCCCAGAGGAGGTGACATTGGAGCTGAAGCCTAAATAAC
AAGAAGCCAGCTATTCAGAGATCAAGGGAAGCAGGTTCCAGGCAGAGGGAACAGCACATG
CAAAGGCCCTGAGGCCAGATTGAACCTGACA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               158-273, - strand, RNAz p=0.866708
               

               
               343-455, - strand, RNAz p=0.975036

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-273, - strand, RNAz p=0.866708
               

               
               343-455, - strand, RNAz p=0.975036

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               416-538, - strand, RNAmicro p=0.95965

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               416-538, - strand, RNAmicro p=0.95965

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-510, gnl|bosTau2|chr7 (3489789-3489264)
               

               
               1-510, gnl|Hg17|chr5 (178661735-178662478)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-510, gnl|bosTau2|chr7 (3489789-3489264)
               

               
               1-510, gnl|Hg17|chr5 (178661735-178662478)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	158-273, - strand, RNAz p=0.866708
	343-455, - strand, RNAz p=0.975036

	1-510, gnl\|bosTau2\|chr7 (3489789-3489264)
	1-510, gnl\|Hg17\|chr5 (178661735-178662478)