Non-Coding RNA Search

rgul0125_m15.y1

Sequence:


               
               ctgcaatctacaccacagctcacggcagtgccgtttccttaacccactgagcaaggccag
ggatgaacccgcaacctcatggttactactcaggttcattaaccactgagccacaatggg
aacGCCTGACTTTGCTTTTTTAAGATTAAAATGTTCTGTCATATGTAATCATATATTCTA
TCATATAGAATAGGTAGCCAGCCTTAGTTGTGTAATTACTAATGATACTGCGGAACTTCC
TCTTTCTCACTCAGAAGCAAGGCATTTGTCACCCAGTGCTGTCCTGCTTCACTCCTCTTC
CTCCTCCTTACCAAATAGAAAACATTTTATATGGGTAATGTCTTAGTACATTTCAGTACA
AAATAAGTTTGCTTTGTTGCTTTAACCAGCATCTTCATTTGAAGCCATTTGGTTTAGGAT
GTCAGACTTGATGCTGTACTTGATTTTGTCCTTTAGAGTTGAGTCTTCATGGTTCTCCCC
CAGATAGTTTTCGCTGTCTCTAAGGAGAGTTACAGGCTTTAGCTTTAGAAACTCTATTGC
CGGGAATGGCTGCAGGCACACAGTCCTGCCTCGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ctgcaatctacaccacagctcacggcagtgccgtttccttaacccactgagcaaggccag
ggatgaacccgcaacctcatggttactactcaggttcattaaccactgagccacaatggg
aacGCCTGACTTTGCTTTTTTAAGATTAAAATGTTCTGTCATATGTAATCATATATTCTA
TCATATAGAATAGGTAGCCAGCCTTAGTTGTGTAATTACTAATGATACTGCGGAACTTCC
TCTTTCTCACTCAGAAGCAAGGCATTTGTCACCCAGTGCTGTCCTGCTTCACTCCTCTTC
CTCCTCCTTACCAAATAGAAAACATTTTATATGGGTAATGTCTTAGTACATTTCAGTACA
AAATAAGTTTGCTTTGTTGCTTTAACCAGCATCTTCATTTGAAGCCATTTGGTTTAGGAT
GTCAGACTTGATGCTGTACTTGATTTTGTCCTTTAGAGTTGAGTCTTCATGGTTCTCCCC
CAGATAGTTTTCGCTGTCTCTAAGGAGAGTTACAGGCTTTAGCTTTAGAAACTCTATTGC
CGGGAATGGCTGCAGGCACACAGTCCTGCCTCGAGGA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               187-574, gnl|bosTau2|chr19 (28511434-28511040)
               

               
               187-574, gnl|canFam2|chr9 (30367256-30367607)
               

               
               187-574, gnl|dasNov1|scaffold_200878 (4008-3648)
               

               
               187-574, gnl|echTel1|scaffold_168105 (4486-4808)
               

               
               187-574, gnl|hg17|chr17 (46647167-46647517)
               

               
               187-574, gnl|Hg17|chr17 (46647605-46647202)
               

               
               187-574, gnl|mm7|chr11 (94023789-94023436)
               

               
               187-574, gnl|Mm7|chr11 (94023275-94023755)
               

               
               187-574, gnl|panTro1|chr19_random (32289598-32289948)
               

               
               187-574, gnl|rheMac2|chr16 (35450460-35450814)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-574, gnl|bosTau2|chr19 (28511434-28511040)
               

               
               187-574, gnl|canFam2|chr9 (30367256-30367607)
               

               
               187-574, gnl|dasNov1|scaffold_200878 (4008-3648)
               

               
               187-574, gnl|echTel1|scaffold_168105 (4486-4808)
               

               
               187-574, gnl|hg17|chr17 (46647167-46647517)
               

               
               187-574, gnl|Hg17|chr17 (46647605-46647202)
               

               
               187-574, gnl|mm7|chr11 (94023789-94023436)
               

               
               187-574, gnl|Mm7|chr11 (94023275-94023755)
               

               
               187-574, gnl|panTro1|chr19_random (32289598-32289948)
               

               
               187-574, gnl|rheMac2|chr16 (35450460-35450814)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	187-574, gnl\|bosTau2\|chr19 (28511434-28511040)
	187-574, gnl\|canFam2\|chr9 (30367256-30367607)
	187-574, gnl\|dasNov1\|scaffold_200878 (4008-3648)
	187-574, gnl\|echTel1\|scaffold_168105 (4486-4808)
	187-574, gnl\|hg17\|chr17 (46647167-46647517)
	187-574, gnl\|Hg17\|chr17 (46647605-46647202)
	187-574, gnl\|mm7\|chr11 (94023789-94023436)
	187-574, gnl\|Mm7\|chr11 (94023275-94023755)
	187-574, gnl\|panTro1\|chr19_random (32289598-32289948)
	187-574, gnl\|rheMac2\|chr16 (35450460-35450814)