Non-Coding RNA Search

rgul0125_o18.y1

Sequence:


               
               TCCACAGTTTTCCAGAGAGATGAAACACCCTGCTCATCACCAGAAAAAGTGGCAATGCTG
GACGGTTCTCACAAGGACAAAACTCTGCCCAATGCAAATGACGACACACTTATGCGAAGA
ATGTCCACAGTAGGAAAAAAGTCAGTGCAGACCATTTCCAATGAAAAGAGAGCTTCGAAG
GTTCTAGGGATTGTGTTTTTCCTCTTTTTGCTTATGTGGTGCCCCTTTTTTATTACAAAT
ATAACTTTAGTTTTATGTGATTCCTGCGACCAGACTACTCTCCAAATGCTCCTGGAGATA
TTTGTGTGGATAGGCTATGTTTCCTCAGGGGTGAATCCTTTGGTCTACACCCTCTTCAAC
AAGACATTTCGGAATGCATTTGGCCGATATATCACCTGCAATTACAGGGCCACGAAATCA
GTAAAAACGCTTAGAAAATGCTCCAGTAATATCTACTTCCAGAATCCAATGGCAGAGAAC
TCTAAGTTGTTCATGAAACATGGAATGCGAAACGGCATTAATCCTGCCATGTACCAGAGC
CCAAAGAGGCTCCGAAGTTCAACCATTCAGTCTTCATCAGTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCACAGTTTTCCAGAGAGATGAAACACCCTGCTCATCACCAGAAAAAGTGGCAATGCTG
GACGGTTCTCACAAGGACAAAACTCTGCCCAATGCAAATGACGACACACTTATGCGAAGA
ATGTCCACAGTAGGAAAAAAGTCAGTGCAGACCATTTCCAATGAAAAGAGAGCTTCGAAG
GTTCTAGGGATTGTGTTTTTCCTCTTTTTGCTTATGTGGTGCCCCTTTTTTATTACAAAT
ATAACTTTAGTTTTATGTGATTCCTGCGACCAGACTACTCTCCAAATGCTCCTGGAGATA
TTTGTGTGGATAGGCTATGTTTCCTCAGGGGTGAATCCTTTGGTCTACACCCTCTTCAAC
AAGACATTTCGGAATGCATTTGGCCGATATATCACCTGCAATTACAGGGCCACGAAATCA
GTAAAAACGCTTAGAAAATGCTCCAGTAATATCTACTTCCAGAATCCAATGGCAGAGAAC
TCTAAGTTGTTCATGAAACATGGAATGCGAAACGGCATTAATCCTGCCATGTACCAGAGC
CCAAAGAGGCTCCGAAGTTCAACCATTCAGTCTTCATCAGTCATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21665880|emb|CAD37209.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21665880|emb|CAD37209.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               280-399, - strand, RNAz p=0.551101
               

               
               440-585, - strand, RNAz p=0.644762

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-399, - strand, RNAz p=0.551101
               

               
               440-585, - strand, RNAz p=0.644762

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-585, gnl|bosTau2|chr2 (73050586-73051170)
               

               
               1-585, gnl|Hg17|chr2 (231799389-231798805)
               

               
               1-585, gnl|Mm7|chr1 (86000719-86000135)
               


               
               146-409, gnl|bosTau2|chr12 (7448928-7448662)
               

               
               146-409, gnl|Hg17|chr13 (46307454-46307188)
               

               
               146-409, gnl|Mm7|chr14 (69387620-69387886)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-585, gnl|bosTau2|chr2 (73050586-73051170)
               

               
               1-585, gnl|Hg17|chr2 (231799389-231798805)
               

               
               1-585, gnl|Mm7|chr1 (86000719-86000135)
               


               
               146-409, gnl|bosTau2|chr12 (7448928-7448662)
               

               
               146-409, gnl|Hg17|chr13 (46307454-46307188)
               

               
               146-409, gnl|Mm7|chr14 (69387620-69387886)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	280-399, - strand, RNAz p=0.551101
	440-585, - strand, RNAz p=0.644762

	1-585, gnl\|bosTau2\|chr2 (73050586-73051170)
	1-585, gnl\|Hg17\|chr2 (231799389-231798805)
	1-585, gnl\|Mm7\|chr1 (86000719-86000135)

	146-409, gnl\|bosTau2\|chr12 (7448928-7448662)
	146-409, gnl\|Hg17\|chr13 (46307454-46307188)
	146-409, gnl\|Mm7\|chr14 (69387620-69387886)