rgul0127_e18.y1
               |  | GTTACAAGCTATAAATAGACACTTTGATGCAGCATTCCACCTGTCAGTCACACTACAGCT
CCCTCCCACGGAAGAAATGGATGGGTTAATCCAATTCTGGTACACCCAAATCTGATGCTG
TAAGACCAAGCTTGGTTCCCAGGAAACCAACAGGAATGGGTCAGAGCTGTCTCCCAGATA
CTGATGGGTGCAGAGAGGGAGGAGAAACTGGGAGAAATGAGCCTAGCTGGGTTTTAAGCA
AAGTGGAAGGTGTCCTGGAAGTGGGAGAAGGATTGGGGTGCTTTAAGTGGCAGATGGGAA
TGGCAGCACACTATAGAGACCAAGACCTTCTGAGCAAGAAGAGTAGAAAACAAGTGGCTC
CTGAGTTAGTCTTTTTCTCTGTGCAGCAAATGAATGCTTATCCTATCTCTAAGAACTTGA
CATAGCCACTGGGAAATT | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | GTTACAAGCTATAAATAGACACTTTGATGCAGCATTCCACCTGTCAGTCACACTACAGCT
CCCTCCCACGGAAGAAATGGATGGGTTAATCCAATTCTGGTACACCCAAATCTGATGCTG
TAAGACCAAGCTTGGTTCCCAGGAAACCAACAGGAATGGGTCAGAGCTGTCTCCCAGATA
CTGATGGGTGCAGAGAGGGAGGAGAAACTGGGAGAAATGAGCCTAGCTGGGTTTTAAGCA
AAGTGGAAGGTGTCCTGGAAGTGGGAGAAGGATTGGGGTGCTTTAAGTGGCAGATGGGAA
TGGCAGCACACTATAGAGACCAAGACCTTCTGAGCAAGAAGAGTAGAAAACAAGTGGCTC
CTGAGTTAGTCTTTTTCTCTGTGCAGCAAATGAATGCTTATCCTATCTCTAAGAACTTGA
CATAGCCACTGGGAAATT | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map