Non-Coding RNA Search

rhea14_k18.y1

Sequence:


               
               TAGCATAACTAATGCGAAATGAAAATTGGCAATGCCCCCCTCTTTTTACCTTAAACAATG
TGGTAGTGGGAGAACGATAACATGATTGTTTCTGCCACTATCAAGCTGTTTTGGCAAGCT
GACTCTCATTTCCTAAGTGCAACTCTTTTGTGTGTGTGTGTCCTCCTAACATACAAATAA
AATGTTAGAAACTTGACTGGATTGTATGAAGTTCCTGAAGAGAGACTGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCATAACTAATGCGAAATGAAAATTGGCAATGCCCCCCTCTTTTTACCTTAAACAATG
TGGTAGTGGGAGAACGATAACATGATTGTTTCTGCCACTATCAAGCTGTTTTGGCAAGCT
GACTCTCATTTCCTAAGTGCAACTCTTTTGTGTGTGTGTGTCCTCCTAACATACAAATAA
AATGTTAGAAACTTGACTGGATTGTATGAAGTTCCTGAAGAGAGACTGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               45-144, - strand, RNAz p=0.97682

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-144, - strand, RNAz p=0.97682

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               55-112, + strand, RNAmicro p=0.999535

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               55-112, + strand, RNAmicro p=0.999535

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               3-231, gnl|bosTau2|chr9 (43903583-43903346)
               

               
               3-231, gnl|canFam2|chr1 (31832020-31832868)
               

               
               3-231, gnl|dasNov1|scaffold_138692 (3502-4333)
               

               
               3-231, gnl|echTel1|scaffold_300935 (5777-6616)
               

               
               3-231, gnl|hg17|chr6 (136555879-136556703)
               

               
               3-231, gnl|Hg17|chr6 (136556404-136556627)
               

               
               3-231, gnl|loxAfr1|scaffold_9055 (20851-21677)
               

               
               3-231, gnl|mm7|chr10 (20123936-20123122)
               

               
               3-231, gnl|Mm7|chr10 (20123421-20123195)
               

               
               3-231, gnl|monDom2|scaffold_0 (74056695-74055848)
               

               
               3-231, gnl|oryCun1|scaffold_210082 (52400-51544)
               

               
               3-231, gnl|panTro1|chr5 (139362128-139362953)
               

               
               3-231, gnl|rheMac2|chr4 (127648165-127647351)
               

               
               3-231, gnl|rn3|chr1 (15700335-15699521)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-231, gnl|bosTau2|chr9 (43903583-43903346)
               

               
               3-231, gnl|canFam2|chr1 (31832020-31832868)
               

               
               3-231, gnl|dasNov1|scaffold_138692 (3502-4333)
               

               
               3-231, gnl|echTel1|scaffold_300935 (5777-6616)
               

               
               3-231, gnl|hg17|chr6 (136555879-136556703)
               

               
               3-231, gnl|Hg17|chr6 (136556404-136556627)
               

               
               3-231, gnl|loxAfr1|scaffold_9055 (20851-21677)
               

               
               3-231, gnl|mm7|chr10 (20123936-20123122)
               

               
               3-231, gnl|Mm7|chr10 (20123421-20123195)
               

               
               3-231, gnl|monDom2|scaffold_0 (74056695-74055848)
               

               
               3-231, gnl|oryCun1|scaffold_210082 (52400-51544)
               

               
               3-231, gnl|panTro1|chr5 (139362128-139362953)
               

               
               3-231, gnl|rheMac2|chr4 (127648165-127647351)
               

               
               3-231, gnl|rn3|chr1 (15700335-15699521)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hea (0.204499)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)

	3-231, gnl\|bosTau2\|chr9 (43903583-43903346)
	3-231, gnl\|canFam2\|chr1 (31832020-31832868)
	3-231, gnl\|dasNov1\|scaffold_138692 (3502-4333)
	3-231, gnl\|echTel1\|scaffold_300935 (5777-6616)
	3-231, gnl\|hg17\|chr6 (136555879-136556703)
	3-231, gnl\|Hg17\|chr6 (136556404-136556627)
	3-231, gnl\|loxAfr1\|scaffold_9055 (20851-21677)
	3-231, gnl\|mm7\|chr10 (20123936-20123122)
	3-231, gnl\|Mm7\|chr10 (20123421-20123195)
	3-231, gnl\|monDom2\|scaffold_0 (74056695-74055848)
	3-231, gnl\|oryCun1\|scaffold_210082 (52400-51544)
	3-231, gnl\|panTro1\|chr5 (139362128-139362953)
	3-231, gnl\|rheMac2\|chr4 (127648165-127647351)
	3-231, gnl\|rn3\|chr1 (15700335-15699521)