Non-Coding RNA Search

rhea15_b24.y1

Sequence:


               
               ATCTCACAACATAATGAAGAATATATAAAAGATTGTGCTAATGCTAGTGCTGGGAAAGAA
TGAGCTTTCTTAAACTGAGCTGCTTAAAAATCAAACCAATTTTCCCATCTGTTTGCTTCA
TCTGATAGTGTGCCCTCTACTGGGTTGTTTTGTGCTTTCCACAGTAGAAGGGACCAGTAC
AGGTTTGACTATCCTGCTCATTCTTGCATGGGAAATGCTTTCCATCTTGTCTAACCCTGT
AATGTTAATTATTTAGGTGTTTTCATTTGTTTAACCCTCAAATATTCTAACATCACACAC
AACAAGGTGCTAATGGAAAACTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCACAACATAATGAAGAATATATAAAAGATTGTGCTAATGCTAGTGCTGGGAAAGAA
TGAGCTTTCTTAAACTGAGCTGCTTAAAAATCAAACCAATTTTCCCATCTGTTTGCTTCA
TCTGATAGTGTGCCCTCTACTGGGTTGTTTTGTGCTTTCCACAGTAGAAGGGACCAGTAC
AGGTTTGACTATCCTGCTCATTCTTGCATGGGAAATGCTTTCCATCTTGTCTAACCCTGT
AATGTTAATTATTTAGGTGTTTTCATTTGTTTAACCCTCAAATATTCTAACATCACACAC
AACAAGGTGCTAATGGAAAACTGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-325, - strand, RNAz p=0.801901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-325, - strand, RNAz p=0.801901

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-325, gnl|bosTau2|chr17 (39315197-39315520)
               

               
               1-325, gnl|canFam2|chr26 (25614991-25615765)
               

               
               1-325, gnl|dasNov1|scaffold_161963 (1517-769)
               

               
               1-325, gnl|echTel1|scaffold_295808 (101564-100867)
               

               
               1-325, gnl|galGal2|chr15 (11028725-11027953)
               

               
               1-325, gnl|hg17|chr22 (27994617-27995390)
               

               
               1-325, gnl|Hg17|chr22 (27994647-27994968)
               

               
               1-325, gnl|loxAfr1|scaffold_99174 (736-4)
               

               
               1-325, gnl|mm7|chr11 (5043668-5042933)
               

               
               1-325, gnl|Mm7|chr11 (5043625-5043322)
               

               
               1-325, gnl|monDom2|scaffold_89 (3077251-3077979)
               

               
               1-325, gnl|oryCun1|scaffold_132880 (4006-3225)
               

               
               1-325, gnl|panTro1|chr23 (28098294-28099070)
               

               
               1-325, gnl|rheMac2|chr10 (73100605-73101391)
               

               
               1-325, gnl|rn3|chr14 (85770773-85770036)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-325, gnl|bosTau2|chr17 (39315197-39315520)
               

               
               1-325, gnl|canFam2|chr26 (25614991-25615765)
               

               
               1-325, gnl|dasNov1|scaffold_161963 (1517-769)
               

               
               1-325, gnl|echTel1|scaffold_295808 (101564-100867)
               

               
               1-325, gnl|galGal2|chr15 (11028725-11027953)
               

               
               1-325, gnl|hg17|chr22 (27994617-27995390)
               

               
               1-325, gnl|Hg17|chr22 (27994647-27994968)
               

               
               1-325, gnl|loxAfr1|scaffold_99174 (736-4)
               

               
               1-325, gnl|mm7|chr11 (5043668-5042933)
               

               
               1-325, gnl|Mm7|chr11 (5043625-5043322)
               

               
               1-325, gnl|monDom2|scaffold_89 (3077251-3077979)
               

               
               1-325, gnl|oryCun1|scaffold_132880 (4006-3225)
               

               
               1-325, gnl|panTro1|chr23 (28098294-28099070)
               

               
               1-325, gnl|rheMac2|chr10 (73100605-73101391)
               

               
               1-325, gnl|rn3|chr14 (85770773-85770036)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               hea (0.204499)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)

	1-325, gnl\|bosTau2\|chr17 (39315197-39315520)
	1-325, gnl\|canFam2\|chr26 (25614991-25615765)
	1-325, gnl\|dasNov1\|scaffold_161963 (1517-769)
	1-325, gnl\|echTel1\|scaffold_295808 (101564-100867)
	1-325, gnl\|galGal2\|chr15 (11028725-11027953)
	1-325, gnl\|hg17\|chr22 (27994617-27995390)
	1-325, gnl\|Hg17\|chr22 (27994647-27994968)
	1-325, gnl\|loxAfr1\|scaffold_99174 (736-4)
	1-325, gnl\|mm7\|chr11 (5043668-5042933)
	1-325, gnl\|Mm7\|chr11 (5043625-5043322)
	1-325, gnl\|monDom2\|scaffold_89 (3077251-3077979)
	1-325, gnl\|oryCun1\|scaffold_132880 (4006-3225)
	1-325, gnl\|panTro1\|chr23 (28098294-28099070)
	1-325, gnl\|rheMac2\|chr10 (73100605-73101391)
	1-325, gnl\|rn3\|chr14 (85770773-85770036)