Non-Coding RNA Search

rhea38_k21.y1

Sequence:


               
               AAAATAAAATGCACACCAAAATGTATGCATGGAGTTGGATTTTCCTTCATAAATATACTG
GTAGTGTTTTTATTTGGCTTCAGCACCAATTCCCAGTAACTCATGATCAGCTTTGCCTCT
TCCCCACTTTTATAGGAAATAGTTTGCTTTAGAAAGGGCTGTGGTGGAGTGAGGGAATGA
AGAAGAAAGAGAAGAGTGCTGTTTTGTGATTTGGTGGGGTCTGCTGTTCTTACGAATCCA
AACACAAACTGCTTATTCTAAAAGTCACTCACCAAGGGTGTGATTACTAATTTAGATCTA
AACATGCATCTTGACAGCCACAGCTACACTTTGCTCTGCTGTGATTTGATGTGTAGCATC
AGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATAAAATGCACACCAAAATGTATGCATGGAGTTGGATTTTCCTTCATAAATATACTG
GTAGTGTTTTTATTTGGCTTCAGCACCAATTCCCAGTAACTCATGATCAGCTTTGCCTCT
TCCCCACTTTTATAGGAAATAGTTTGCTTTAGAAAGGGCTGTGGTGGAGTGAGGGAATGA
AGAAGAAAGAGAAGAGTGCTGTTTTGTGATTTGGTGGGGTCTGCTGTTCTTACGAATCCA
AACACAAACTGCTTATTCTAAAAGTCACTCACCAAGGGTGTGATTACTAATTTAGATCTA
AACATGCATCTTGACAGCCACAGCTACACTTTGCTCTGCTGTGATTTGATGTGTAGCATC
AGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-152, - strand, RNAz p=0.995467
               

               
               244-361, + strand, RNAz p=0.722194

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-152, - strand, RNAz p=0.995467
               

               
               244-361, + strand, RNAz p=0.722194

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-186, gnl|bosTau2|chr2 (17872757-17872942)
               

               
               1-186, gnl|canFam2|chr36 (19205285-19205700)
               

               
               1-186, gnl|hg17|chr2 (172466133-172466548)
               

               
               1-186, gnl|Hg17|chr2 (172466411-172466192)
               

               
               1-186, gnl|loxAfr1|scaffold_9633 (35319-35736)
               

               
               1-186, gnl|mm7|chr2 (71117778-71118134)
               

               
               1-186, gnl|monDom2|scaffold_2 (70508406-70508821)
               

               
               1-186, gnl|oryCun1|scaffold_157770 (6214-5813)
               

               
               1-186, gnl|panTro1|chr13 (62109683-62110098)
               

               
               1-186, gnl|rheMac2|chr12 (35418758-35419173)
               

               
               1-186, gnl|rn3|chr3 (53441500-53441841)
               


               
               208-364, gnl|bosTau2|chr2 (17872941-17873099)
               

               
               208-364, gnl|Hg17|chr2 (172466193-172466037)
               

               
               208-364, gnl|Mm7|chr2 (71117840-71117648)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr2 (17872757-17872942)
               

               
               1-186, gnl|canFam2|chr36 (19205285-19205700)
               

               
               1-186, gnl|hg17|chr2 (172466133-172466548)
               

               
               1-186, gnl|Hg17|chr2 (172466411-172466192)
               

               
               1-186, gnl|loxAfr1|scaffold_9633 (35319-35736)
               

               
               1-186, gnl|mm7|chr2 (71117778-71118134)
               

               
               1-186, gnl|monDom2|scaffold_2 (70508406-70508821)
               

               
               1-186, gnl|oryCun1|scaffold_157770 (6214-5813)
               

               
               1-186, gnl|panTro1|chr13 (62109683-62110098)
               

               
               1-186, gnl|rheMac2|chr12 (35418758-35419173)
               

               
               1-186, gnl|rn3|chr3 (53441500-53441841)
               


               
               208-364, gnl|bosTau2|chr2 (17872941-17873099)
               

               
               208-364, gnl|Hg17|chr2 (172466193-172466037)
               

               
               208-364, gnl|Mm7|chr2 (71117840-71117648)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               hea (0.204499)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)

	40-152, - strand, RNAz p=0.995467
	244-361, + strand, RNAz p=0.722194

	1-186, gnl\|bosTau2\|chr2 (17872757-17872942)
	1-186, gnl\|canFam2\|chr36 (19205285-19205700)
	1-186, gnl\|hg17\|chr2 (172466133-172466548)
	1-186, gnl\|Hg17\|chr2 (172466411-172466192)
	1-186, gnl\|loxAfr1\|scaffold_9633 (35319-35736)
	1-186, gnl\|mm7\|chr2 (71117778-71118134)
	1-186, gnl\|monDom2\|scaffold_2 (70508406-70508821)
	1-186, gnl\|oryCun1\|scaffold_157770 (6214-5813)
	1-186, gnl\|panTro1\|chr13 (62109683-62110098)
	1-186, gnl\|rheMac2\|chr12 (35418758-35419173)
	1-186, gnl\|rn3\|chr3 (53441500-53441841)

	208-364, gnl\|bosTau2\|chr2 (17872941-17873099)
	208-364, gnl\|Hg17\|chr2 (172466193-172466037)
	208-364, gnl\|Mm7\|chr2 (71117840-71117648)