rhea39_h1.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATTATGCAGCGGCCCAGCTGGAGAAGCAGCATGTGCATGATGTGTATAAGAGCACCGC GCCTTACTTCAGTGACCTGCAGAGCAAAGCCTGGCCTCGTGTCCGCCAGTTCCTCCAGGA GCAGAAGCCAGGCAGCCTCATTGCTGACATAGGTTGCGGGACTGGAAAGTATCTTAAGGT GAACAGCCAGGTCCATACCCTGGGCTGTGATTACTGTGAGCCACTGGTAGAGATTGCCCG GAATAGAGGATGTGAAGTCATGGTATGTGACAACCTTAATCTCCCCTTTAGGGACCAGGG CTTCGATGCCATCATCTCCATAGGAGTCATACATCATTTTTCTACCAAACAAAGAAGAAT CAGAGCAATAAAAGAAATGGCCAGGGTCTTAGTTCCCGGAGGCCAGCTGATGATTTACGT TTGGGCCATGGAACAAAAGAACCGGCACTTTGAGAAGCAAGACGTGCTTGTCCCATGGAA CAAAGCCTTGTGCTCCCAGTCCCTCTTAGAATCCAGCCAGCCTGGGAGAAGGAAGCAGTG TGGGCACCCAGAAAGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATTATGCAGCGGCCCAGCTGGAGAAGCAGCATGTGCATGATGTGTATAAGAGCACCGC GCCTTACTTCAGTGACCTGCAGAGCAAAGCCTGGCCTCGTGTCCGCCAGTTCCTCCAGGA GCAGAAGCCAGGCAGCCTCATTGCTGACATAGGTTGCGGGACTGGAAAGTATCTTAAGGT GAACAGCCAGGTCCATACCCTGGGCTGTGATTACTGTGAGCCACTGGTAGAGATTGCCCG GAATAGAGGATGTGAAGTCATGGTATGTGACAACCTTAATCTCCCCTTTAGGGACCAGGG CTTCGATGCCATCATCTCCATAGGAGTCATACATCATTTTTCTACCAAACAAAGAAGAAT CAGAGCAATAAAAGAAATGGCCAGGGTCTTAGTTCCCGGAGGCCAGCTGATGATTTACGT TTGGGCCATGGAACAAAAGAACCGGCACTTTGAGAAGCAAGACGTGCTTGTCCCATGGAA CAAAGCCTTGTGCTCCCAGTCCCTCTTAGAATCCAGCCAGCCTGGGAGAAGGAAGCAGTG TGGGCACCCAGAAAGAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 364-483, + strand, RNAz p=0.560598 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 364-483, + strand, RNAz p=0.560598 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 151-324, gnl|bosTau2|chr3 (1015948-1016121) | |
| 151-324, gnl|canFam2|chr16 (39426021-39426224) | |
| 151-324, gnl|danRer3|chr15 (33177748-33177941) | |
| 151-324, gnl|echTel1|scaffold_297714 (83257-83053) | |
| 151-324, gnl|fr1|chrUn (56899273-56899472) | |
| 151-324, gnl|galGal2|chr4 (65100082-65099880) | |
| 151-324, gnl|hg17|chr8 (12914541-12914744) | |
| 151-324, gnl|Hg17|chr8 (12914562-12914735) | |
| 151-324, gnl|loxAfr1|scaffold_4957 (7705-7502) | |
| 151-324, gnl|mm7|chr8 (35272543-35272746) | |
| 151-324, gnl|Mm7|chr8 (35272564-35272737) | |
| 151-324, gnl|monDom2|scaffold_32 (15800110-15799915) | |
| 151-324, gnl|oryCun1|scaffold_174344 (62012-62215) | |
| 151-324, gnl|panTro1|chr7 (13429310-13429514) | |
| 151-324, gnl|rheMac2|chr8 (12771222-12771425) | |
| 151-324, gnl|rn3|chr16 (59437235-59437032) | |
| 151-324, gnl|tetNig1|chr16 (4713265-4713446) | |
| 151-324, gnl|xenTro1|scaffold_401 (155632-155838) | |
| 325-556, gnl|bosTau2|chr3 (1022731-1022962) | |
| 325-556, gnl|canFam2|chr16 (39431936-39432140) | |
| 325-556, gnl|danRer3|chr15 (33184765-33184930) | |
| 325-556, gnl|dasNov1|scaffold_84849 (7407-7203) | |
| 325-556, gnl|echTel1|scaffold_297714 (78179-77970) | |
| 325-556, gnl|fr1|chrUn (56899821-56900016) | |
| 325-556, gnl|galGal2|chr4 (65097006-65096818) | |
| 325-556, gnl|hg17|chr8 (12922855-12923059) | |
| 325-556, gnl|Hg17|chr8 (12922886-12923117) | |
| 325-556, gnl|loxAfr1|scaffold_4957 (2510-2305) | |
| 325-556, gnl|mm7|chr8 (35278557-35278758) | |
| 325-556, gnl|Mm7|chr8 (35278585-35278816) | |
| 325-556, gnl|monDom2|scaffold_32 (15796534-15796330) | |
| 325-556, gnl|oryCun1|scaffold_168167 (1072-1276) | |
| 325-556, gnl|panTro1|chr7 (13519965-13520169) | |
| 325-556, gnl|rheMac2|chr8 (12779234-12779438) | |
| 325-556, gnl|rn3|chr16 (59431664-59431462) | |
| 325-556, gnl|tetNig1|chr16 (4713592-4713767) | |
| 325-556, gnl|xenTro1|scaffold_401 (156151-156347) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 151-324, gnl|bosTau2|chr3 (1015948-1016121) | |
| 151-324, gnl|canFam2|chr16 (39426021-39426224) | |
| 151-324, gnl|danRer3|chr15 (33177748-33177941) | |
| 151-324, gnl|echTel1|scaffold_297714 (83257-83053) | |
| 151-324, gnl|fr1|chrUn (56899273-56899472) | |
| 151-324, gnl|galGal2|chr4 (65100082-65099880) | |
| 151-324, gnl|hg17|chr8 (12914541-12914744) | |
| 151-324, gnl|Hg17|chr8 (12914562-12914735) | |
| 151-324, gnl|loxAfr1|scaffold_4957 (7705-7502) | |
| 151-324, gnl|mm7|chr8 (35272543-35272746) | |
| 151-324, gnl|Mm7|chr8 (35272564-35272737) | |
| 151-324, gnl|monDom2|scaffold_32 (15800110-15799915) | |
| 151-324, gnl|oryCun1|scaffold_174344 (62012-62215) | |
| 151-324, gnl|panTro1|chr7 (13429310-13429514) | |
| 151-324, gnl|rheMac2|chr8 (12771222-12771425) | |
| 151-324, gnl|rn3|chr16 (59437235-59437032) | |
| 151-324, gnl|tetNig1|chr16 (4713265-4713446) | |
| 151-324, gnl|xenTro1|scaffold_401 (155632-155838) | |
| 325-556, gnl|bosTau2|chr3 (1022731-1022962) | |
| 325-556, gnl|canFam2|chr16 (39431936-39432140) | |
| 325-556, gnl|danRer3|chr15 (33184765-33184930) | |
| 325-556, gnl|dasNov1|scaffold_84849 (7407-7203) | |
| 325-556, gnl|echTel1|scaffold_297714 (78179-77970) | |
| 325-556, gnl|fr1|chrUn (56899821-56900016) | |
| 325-556, gnl|galGal2|chr4 (65097006-65096818) | |
| 325-556, gnl|hg17|chr8 (12922855-12923059) | |
| 325-556, gnl|Hg17|chr8 (12922886-12923117) | |
| 325-556, gnl|loxAfr1|scaffold_4957 (2510-2305) | |
| 325-556, gnl|mm7|chr8 (35278557-35278758) | |
| 325-556, gnl|Mm7|chr8 (35278585-35278816) | |
| 325-556, gnl|monDom2|scaffold_32 (15796534-15796330) | |
| 325-556, gnl|oryCun1|scaffold_168167 (1072-1276) | |
| 325-556, gnl|panTro1|chr7 (13519965-13520169) | |
| 325-556, gnl|rheMac2|chr8 (12779234-12779438) | |
| 325-556, gnl|rn3|chr16 (59431664-59431462) | |
| 325-556, gnl|tetNig1|chr16 (4713592-4713767) | |
| 325-556, gnl|xenTro1|scaffold_401 (156151-156347) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) |