Non-Coding RNA Search

rhlv01b_e9.y1

Sequence:


               
               CCGCTCCATCCGGGTCTCTGGGCACCTCCCCTGGATGACGCTACAGTCGCGGACGGCTTC
TCCGTGACGTAGTCAAACCCCGTCCGCTGCGTTGTGACGTCACAGAGCCTACGGCCCCGC
CCCCCTATTTTCTCCGAGGGCGCCTCCCTGCGTTTCCTCTAAGGGGCGGGGCGTTGCGAT
GAAACCAGTGCACCAGCCTAAGCCCGCCCCTGGTGGAGCCGGTGAGGCGGGACTAGGTGG
GATGGCAGGCTGTTCCCCTTGCAGTTCGTCCAGCTCTTCGTCCATGACGAAAGCCGCAGG
GAGCTCAAGGTCAAGTTCCGCACCGGCCGCGCTTTCTACCTGCAGTTGCGGGCCCCGCCC
GAGACCCGCGACCGTGAGTTCGGCCAGTGGGTGCGGCTGCTCTACCGCCTGCGCTTCCAC
TCGGCCCAGGGAGCCGTGCCCTTCACGCAGGCGTACTCGGCGCTGGAGGATGAGGAGGAG
GACGACGACGAGGACGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCTCCATCCGGGTCTCTGGGCACCTCCCCTGGATGACGCTACAGTCGCGGACGGCTTC
TCCGTGACGTAGTCAAACCCCGTCCGCTGCGTTGTGACGTCACAGAGCCTACGGCCCCGC
CCCCCTATTTTCTCCGAGGGCGCCTCCCTGCGTTTCCTCTAAGGGGCGGGGCGTTGCGAT
GAAACCAGTGCACCAGCCTAAGCCCGCCCCTGGTGGAGCCGGTGAGGCGGGACTAGGTGG
GATGGCAGGCTGTTCCCCTTGCAGTTCGTCCAGCTCTTCGTCCATGACGAAAGCCGCAGG
GAGCTCAAGGTCAAGTTCCGCACCGGCCGCGCTTTCTACCTGCAGTTGCGGGCCCCGCCC
GAGACCCGCGACCGTGAGTTCGGCCAGTGGGTGCGGCTGCTCTACCGCCTGCGCTTCCAC
TCGGCCCAGGGAGCCGTGCCCTTCACGCAGGCGTACTCGGCGCTGGAGGATGAGGAGGAG
GACGACGACGAGGACGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55650305|ref|XP_513012.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55650305|ref|XP_513012.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               285-404, - strand, RNAz p=0.544874

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-404, - strand, RNAz p=0.544874

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               246-498, gnl|bosTau2|chr18 (49286493-49286241)
               

               
               246-498, gnl|Hg17|chr19 (55662901-55662607)
               

               
               246-498, gnl|Mm7|chr7 (40674415-40674667)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               246-498, gnl|bosTau2|chr18 (49286493-49286241)
               

               
               246-498, gnl|Hg17|chr19 (55662901-55662607)
               

               
               246-498, gnl|Mm7|chr7 (40674415-40674667)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	246-498, gnl\|bosTau2\|chr18 (49286493-49286241)
	246-498, gnl\|Hg17\|chr19 (55662901-55662607)
	246-498, gnl\|Mm7\|chr7 (40674415-40674667)