Non-Coding RNA Search

rhlv01b_h12.y1

Sequence:


               
               GAAAAAAATCATCACAAAGAAGTAATTCCACTTAAACATATTTTAAATTAGAGATAAAGC
TTTATCAGCATTTGGCTGTTGGAAAATTACAGAGTCGAATCTGGTCAGCTTCTCATGGAA
TTTACTGTTAGTACCACTACAGATGTACCAAATTTATTTTGTTGCTTATCTCTAAGTTCC
TACCCACTCGAAGAAGGAAAGAGACCTAAATTGACTTAAAAGATTTTTGTGTTCTGTTTT
ATTTTATTAAATAATCTATAGATTTAATGGATTTGAGAACCACTCAAAAGATGAGGTAAA
TATTTCAGGGACACCACAAGTCCTTCCGAAGATTAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAAAATCATCACAAAGAAGTAATTCCACTTAAACATATTTTAAATTAGAGATAAAGC
TTTATCAGCATTTGGCTGTTGGAAAATTACAGAGTCGAATCTGGTCAGCTTCTCATGGAA
TTTACTGTTAGTACCACTACAGATGTACCAAATTTATTTTGTTGCTTATCTCTAAGTTCC
TACCCACTCGAAGAAGGAAAGAGACCTAAATTGACTTAAAAGATTTTTGTGTTCTGTTTT
ATTTTATTAAATAATCTATAGATTTAATGGATTTGAGAACCACTCAAAAGATGAGGTAAA
TATTTCAGGGACACCACAAGTCCTTCCGAAGATTAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               34-126, + strand, RNAz p=0.835013

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               34-126, + strand, RNAz p=0.835013

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               34-359, gnl|bosTau2|chr3 (31390226-31390542)
               

               
               34-359, gnl|canFam2|chr6 (45904520-45904170)
               

               
               34-359, gnl|dasNov1|scaffold_11908 (12592-12232)
               

               
               34-359, gnl|echTel1|scaffold_309299 (113395-113057)
               

               
               34-359, gnl|hg17|chr1 (109170999-109171356)
               

               
               34-359, gnl|Hg17|chr1 (109171442-109171097)
               

               
               34-359, gnl|oryCun1|scaffold_213145 (4114-3780)
               

               
               34-359, gnl|panTro1|chr1 (108098938-108099291)
               

               
               34-359, gnl|rheMac2|chr1 (111931132-111931485)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-359, gnl|bosTau2|chr3 (31390226-31390542)
               

               
               34-359, gnl|canFam2|chr6 (45904520-45904170)
               

               
               34-359, gnl|dasNov1|scaffold_11908 (12592-12232)
               

               
               34-359, gnl|echTel1|scaffold_309299 (113395-113057)
               

               
               34-359, gnl|hg17|chr1 (109170999-109171356)
               

               
               34-359, gnl|Hg17|chr1 (109171442-109171097)
               

               
               34-359, gnl|oryCun1|scaffold_213145 (4114-3780)
               

               
               34-359, gnl|panTro1|chr1 (108098938-108099291)
               

               
               34-359, gnl|rheMac2|chr1 (111931132-111931485)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	34-359, gnl\|bosTau2\|chr3 (31390226-31390542)
	34-359, gnl\|canFam2\|chr6 (45904520-45904170)
	34-359, gnl\|dasNov1\|scaffold_11908 (12592-12232)
	34-359, gnl\|echTel1\|scaffold_309299 (113395-113057)
	34-359, gnl\|hg17\|chr1 (109170999-109171356)
	34-359, gnl\|Hg17\|chr1 (109171442-109171097)
	34-359, gnl\|oryCun1\|scaffold_213145 (4114-3780)
	34-359, gnl\|panTro1\|chr1 (108098938-108099291)
	34-359, gnl\|rheMac2\|chr1 (111931132-111931485)