Non-Coding RNA Search

rhlv06b_i7.y1

Sequence:


               
               AGGTGAGCGCCGAGCAGCAGCAGGCACAGACTGAGCTGGCCTCCACTTTCCTTTGGATCC
ACAGCCAACTAGAGGCCAACGACTGGCTGGTGGGGACTGATGGGGCCCCAGCCCAGGCCC
TGCCCAGCCCAGGTCCCCCCTCCCCACCTACTTTGTGCCCCTTGGGCAGCCCAGATTTGC
ATGCCCTGCTGGAACACTACTCAGAGTTGCTGGTGCAGGCTGTGCGGAGGAAGGCACAGC
GGGACTGAGGGTTGGCAGCCCCTCCACCCCAGCCCTGTGCTTCAGAAGAAATAGGTATTT
TAAGCAAATAAACTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGAGCGCCGAGCAGCAGCAGGCACAGACTGAGCTGGCCTCCACTTTCCTTTGGATCC
ACAGCCAACTAGAGGCCAACGACTGGCTGGTGGGGACTGATGGGGCCCCAGCCCAGGCCC
TGCCCAGCCCAGGTCCCCCCTCCCCACCTACTTTGTGCCCCTTGGGCAGCCCAGATTTGC
ATGCCCTGCTGGAACACTACTCAGAGTTGCTGGTGCAGGCTGTGCGGAGGAAGGCACAGC
GGGACTGAGGGTTGGCAGCCCCTCCACCCCAGCCCTGTGCTTCAGAAGAAATAGGTATTT
TAAGCAAATAAACTGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-199, - strand, RNAz p=0.885921

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.885921

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-317, gnl|bosTau2|chr18 (41884105-41884421)
               

               
               1-317, gnl|canFam2|chr1 (119503771-119503175)
               

               
               1-317, gnl|dasNov1|scaffold_112772 (1050-494)
               

               
               1-317, gnl|echTel1|scaffold_309793 (46220-46792)
               

               
               1-317, gnl|hg17|chr14 (72726209-72726630)
               

               
               1-317, gnl|Hg17|chr19 (41287526-41287838)
               

               
               1-317, gnl|mm7|chr7 (27182193-27181651)
               

               
               1-317, gnl|Mm7|chr7 (27181969-27181654)
               

               
               1-317, gnl|oryCun1|scaffold_196669 (7746-7168)
               

               
               1-317, gnl|panTro1|chr15 (72512635-72513056)
               

               
               1-317, gnl|rheMac2|chr7 (136308691-136309157)
               

               
               1-317, gnl|rn3|chr1 (85560048-85560611)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-317, gnl|bosTau2|chr18 (41884105-41884421)
               

               
               1-317, gnl|canFam2|chr1 (119503771-119503175)
               

               
               1-317, gnl|dasNov1|scaffold_112772 (1050-494)
               

               
               1-317, gnl|echTel1|scaffold_309793 (46220-46792)
               

               
               1-317, gnl|hg17|chr14 (72726209-72726630)
               

               
               1-317, gnl|Hg17|chr19 (41287526-41287838)
               

               
               1-317, gnl|mm7|chr7 (27182193-27181651)
               

               
               1-317, gnl|Mm7|chr7 (27181969-27181654)
               

               
               1-317, gnl|oryCun1|scaffold_196669 (7746-7168)
               

               
               1-317, gnl|panTro1|chr15 (72512635-72513056)
               

               
               1-317, gnl|rheMac2|chr7 (136308691-136309157)
               

               
               1-317, gnl|rn3|chr1 (85560048-85560611)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	1-317, gnl\|bosTau2\|chr18 (41884105-41884421)
	1-317, gnl\|canFam2\|chr1 (119503771-119503175)
	1-317, gnl\|dasNov1\|scaffold_112772 (1050-494)
	1-317, gnl\|echTel1\|scaffold_309793 (46220-46792)
	1-317, gnl\|hg17\|chr14 (72726209-72726630)
	1-317, gnl\|Hg17\|chr19 (41287526-41287838)
	1-317, gnl\|mm7\|chr7 (27182193-27181651)
	1-317, gnl\|Mm7\|chr7 (27181969-27181654)
	1-317, gnl\|oryCun1\|scaffold_196669 (7746-7168)
	1-317, gnl\|panTro1\|chr15 (72512635-72513056)
	1-317, gnl\|rheMac2\|chr7 (136308691-136309157)
	1-317, gnl\|rn3\|chr1 (85560048-85560611)