Non-Coding RNA Search

rhlv11b_c5.y1

Sequence:


               
               ACTTGGTTCCTGGCTTACAGGAAGAAATTATACATTTAAGAAGACCAGAATGAGTGACAA
ATAGCAATGTGAAGTCGGCTTGCTAAATGCGTCCTTAAAGAAAGACAAGTGCCAAACTCC
TGTGAAACCAGACAGACCTTGCAACGGGATAGCAGCATCAGCATCTCCTTTCTCCTCCTT
CCTCCACATGCTCGGAGTCTCTCAAGCCACATGTCCTTAGCTGTCTGCCTGGAGGTCTGG
AGGTCTGAGCTCCAGCAGCGCAGGCTTTGCTGTCAAGGACTCGTGGAAAACAATCCAAAG
ATCCAGTCTTCAGTGTGGGCACTGGGCTTCATTTCCATGTTGTTGTTTTTCTGGTCTTTG
AAGGCAAATTCTTTACTGATGCAGTAAGACTGGAACTTGGTCAACAGAACAAATGTTATT
TTAAACACCATAATGATAATAATTTAATCAAATGTGATTTACTTTTAATAACTTTATTGG
CCCTTTCATTTTGAAAAGTGGCCACGTGAATGGCTTGCTTATGCATTTTTAACGAGAGAG
GGGAAAAAAACGCTGCTGCTTGTAGGAGCAGAAGACTAATGAGGCTTATTCCCACACTGT
TTCCTGGAACTGAGTCAGCCAACCCTGCCGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTGGTTCCTGGCTTACAGGAAGAAATTATACATTTAAGAAGACCAGAATGAGTGACAA
ATAGCAATGTGAAGTCGGCTTGCTAAATGCGTCCTTAAAGAAAGACAAGTGCCAAACTCC
TGTGAAACCAGACAGACCTTGCAACGGGATAGCAGCATCAGCATCTCCTTTCTCCTCCTT
CCTCCACATGCTCGGAGTCTCTCAAGCCACATGTCCTTAGCTGTCTGCCTGGAGGTCTGG
AGGTCTGAGCTCCAGCAGCGCAGGCTTTGCTGTCAAGGACTCGTGGAAAACAATCCAAAG
ATCCAGTCTTCAGTGTGGGCACTGGGCTTCATTTCCATGTTGTTGTTTTTCTGGTCTTTG
AAGGCAAATTCTTTACTGATGCAGTAAGACTGGAACTTGGTCAACAGAACAAATGTTATT
TTAAACACCATAATGATAATAATTTAATCAAATGTGATTTACTTTTAATAACTTTATTGG
CCCTTTCATTTTGAAAAGTGGCCACGTGAATGGCTTGCTTATGCATTTTTAACGAGAGAG
GGGAAAAAAACGCTGCTGCTTGTAGGAGCAGAAGACTAATGAGGCTTATTCCCACACTGT
TTCCTGGAACTGAGTCAGCCAACCCTGCCGTT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               20-548, gnl|bosTau2|chr3 (41281839-41282373)
               

               
               20-548, gnl|canFam2|chr6 (63775790-63775242)
               

               
               20-548, gnl|dasNov1|scaffold_37586 (10052-9493)
               

               
               20-548, gnl|echTel1|scaffold_297411 (4739-5290)
               

               
               20-548, gnl|hg17|chr1 (87730248-87730805)
               

               
               20-548, gnl|Hg17|chr1 (87730782-87730248)
               

               
               20-548, gnl|loxAfr1|scaffold_2026 (92756-93315)
               

               
               20-548, gnl|mm7|chr3 (143889686-143889136)
               

               
               20-548, gnl|Mm7|chr3 (143889154-143889706)
               

               
               20-548, gnl|monDom2|scaffold_123 (1632448-1632982)
               

               
               20-548, gnl|oryCun1|scaffold_206866 (83352-83821)
               

               
               20-548, gnl|panTro1|chr1_random (80209600-80210160)
               

               
               20-548, gnl|rheMac2|chr1 (90247710-90248286)
               

               
               20-548, gnl|rn3|chr2 (242236330-242235779)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-548, gnl|bosTau2|chr3 (41281839-41282373)
               

               
               20-548, gnl|canFam2|chr6 (63775790-63775242)
               

               
               20-548, gnl|dasNov1|scaffold_37586 (10052-9493)
               

               
               20-548, gnl|echTel1|scaffold_297411 (4739-5290)
               

               
               20-548, gnl|hg17|chr1 (87730248-87730805)
               

               
               20-548, gnl|Hg17|chr1 (87730782-87730248)
               

               
               20-548, gnl|loxAfr1|scaffold_2026 (92756-93315)
               

               
               20-548, gnl|mm7|chr3 (143889686-143889136)
               

               
               20-548, gnl|Mm7|chr3 (143889154-143889706)
               

               
               20-548, gnl|monDom2|scaffold_123 (1632448-1632982)
               

               
               20-548, gnl|oryCun1|scaffold_206866 (83352-83821)
               

               
               20-548, gnl|panTro1|chr1_random (80209600-80210160)
               

               
               20-548, gnl|rheMac2|chr1 (90247710-90248286)
               

               
               20-548, gnl|rn3|chr2 (242236330-242235779)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	20-548, gnl\|bosTau2\|chr3 (41281839-41282373)
	20-548, gnl\|canFam2\|chr6 (63775790-63775242)
	20-548, gnl\|dasNov1\|scaffold_37586 (10052-9493)
	20-548, gnl\|echTel1\|scaffold_297411 (4739-5290)
	20-548, gnl\|hg17\|chr1 (87730248-87730805)
	20-548, gnl\|Hg17\|chr1 (87730782-87730248)
	20-548, gnl\|loxAfr1\|scaffold_2026 (92756-93315)
	20-548, gnl\|mm7\|chr3 (143889686-143889136)
	20-548, gnl\|Mm7\|chr3 (143889154-143889706)
	20-548, gnl\|monDom2\|scaffold_123 (1632448-1632982)
	20-548, gnl\|oryCun1\|scaffold_206866 (83352-83821)
	20-548, gnl\|panTro1\|chr1_random (80209600-80210160)
	20-548, gnl\|rheMac2\|chr1 (90247710-90248286)
	20-548, gnl\|rn3\|chr2 (242236330-242235779)