Non-Coding RNA Search

rhlv15b_i2.y1

Sequence:


               
               AGAAAGTTCTTGCCCTCCTAAGGACAGCTCAGATGACCCTCAAACGTGGGAATCATCAGA
AATTCCTTATCGTAATAAGCTAGGAAAATGGACAAGAACCAGAGCTAGCTGTTCTTTTGA
CATAGAAGCCTGCCACAGGTACTTAAACATTGCACTGTGGTGCAGGGATCCTTTCAAATT
AGGGGGTCTCATCTGCTTGGGGCATGTTAGTTTGAAACTTGAAGAGGTGGCTTTGGGATG
CTTAGCCACATCAAACATGGAATACCTTTCCAAATTCAGACTGGAAGCCCCATCACCTAA
GGCCATGGTCACAAGAACCGCTCTACGCAACCTGAGTGTACAAAAGGGATTCAATGACAC
ATTTTGCTTCGGGGATATTACTGTTCACTTCAAGTATTTGAAAGAAGGAGAGCCAGAGCA
CCATGTAGTTACTAACTTAGAGAAAGAAAAAGAACTCCATTTGGTCGAAGAGGTTTCTGC
CCTGACTAAAGAGGAGCACTTTGTTGGACAGACGGGTTTGACAGAAAATAAGCATAGTTT
CCAAGATACTCAGTTCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAGTTCTTGCCCTCCTAAGGACAGCTCAGATGACCCTCAAACGTGGGAATCATCAGA
AATTCCTTATCGTAATAAGCTAGGAAAATGGACAAGAACCAGAGCTAGCTGTTCTTTTGA
CATAGAAGCCTGCCACAGGTACTTAAACATTGCACTGTGGTGCAGGGATCCTTTCAAATT
AGGGGGTCTCATCTGCTTGGGGCATGTTAGTTTGAAACTTGAAGAGGTGGCTTTGGGATG
CTTAGCCACATCAAACATGGAATACCTTTCCAAATTCAGACTGGAAGCCCCATCACCTAA
GGCCATGGTCACAAGAACCGCTCTACGCAACCTGAGTGTACAAAAGGGATTCAATGACAC
ATTTTGCTTCGGGGATATTACTGTTCACTTCAAGTATTTGAAAGAAGGAGAGCCAGAGCA
CCATGTAGTTACTAACTTAGAGAAAGAAAAAGAACTCCATTTGGTCGAAGAGGTTTCTGC
CCTGACTAAAGAGGAGCACTTTGTTGGACAGACGGGTTTGACAGAAAATAAGCATAGTTT
CCAAGATACTCAGTTCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-241, + strand, RNAz p=0.561123

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-241, + strand, RNAz p=0.561123

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-559, gnl|bosTau2|chr26 (26494373-26493819)
               

               
               2-559, gnl|Hg17|chr10 (119034244-119033687)
               

               
               2-559, gnl|Mm7|chr19 (59223218-59222661)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-559, gnl|bosTau2|chr26 (26494373-26493819)
               

               
               2-559, gnl|Hg17|chr10 (119034244-119033687)
               

               
               2-559, gnl|Mm7|chr19 (59223218-59222661)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	2-559, gnl\|bosTau2\|chr26 (26494373-26493819)
	2-559, gnl\|Hg17\|chr10 (119034244-119033687)
	2-559, gnl\|Mm7\|chr19 (59223218-59222661)