Non-Coding RNA Search

rhlv16b_c23.y1

Sequence:


               
               AAACTTTCCAGCTAAACACCGATAAGACTTCATACAACTCACAATATTCTATACTGTGAT
CATCATAAACAGCCAAGGCTGCCTAAAAGAAGACAGTGATCTCATATTTGGCTGGTAGCT
TTTTCAGCTTTCTCTTGACGGCTTAAAACTTCAGGCTTCCTGCCTTCCTGGTATCATGGA
TAAAGTCCAATACCTCACTCGCTCTGCTATTAGAAGAGCTTCAACCATTGAAATGCCTCA
ACAAGCACGTCAAAACCTTCAGAACCTATTTATCAATTTCTGTCTCATCTTAATATGCCT
CTTGCTGATTTGCATCATCGTGATGCTTCTCTGAAGTTCTGCCACAATCTCCAGTGCTAC
AATTTATCACCATCAGCTTAAAATCTGTCATCCCATGAAGAAGGGAAACAATACTATATA
AGAGACCACTTCCTCAGCAGAAGAAGTTCTTTATGAAAAGGTCAAGATTTGGAATGAAAC
AAATTGTTAGCAAATGTATTCATCTGCTGGATCTTGTAAACATGAAAAGGGCTTTATTTT
CAGAAACTAACTTTAAAATGACTATAAGTGTGCATAATGCAACTGTTGATTTTCTCAACA
GAGCTTATAAATTTCTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTTTCCAGCTAAACACCGATAAGACTTCATACAACTCACAATATTCTATACTGTGAT
CATCATAAACAGCCAAGGCTGCCTAAAAGAAGACAGTGATCTCATATTTGGCTGGTAGCT
TTTTCAGCTTTCTCTTGACGGCTTAAAACTTCAGGCTTCCTGCCTTCCTGGTATCATGGA
TAAAGTCCAATACCTCACTCGCTCTGCTATTAGAAGAGCTTCAACCATTGAAATGCCTCA
ACAAGCACGTCAAAACCTTCAGAACCTATTTATCAATTTCTGTCTCATCTTAATATGCCT
CTTGCTGATTTGCATCATCGTGATGCTTCTCTGAAGTTCTGCCACAATCTCCAGTGCTAC
AATTTATCACCATCAGCTTAAAATCTGTCATCCCATGAAGAAGGGAAACAATACTATATA
AGAGACCACTTCCTCAGCAGAAGAAGTTCTTTATGAAAAGGTCAAGATTTGGAATGAAAC
AAATTGTTAGCAAATGTATTCATCTGCTGGATCTTGTAAACATGAAAAGGGCTTTATTTT
CAGAAACTAACTTTAAAATGACTATAAGTGTGCATAATGCAACTGTTGATTTTCTCAACA
GAGCTTATAAATTTCTATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q56UH4_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q56UH4_CANFA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               213-332, - strand, RNAz p=0.575631

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-332, - strand, RNAz p=0.575631

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               108-619, gnl|bosTau2|chr9 (16247112-16247625)
               

               
               108-619, gnl|Hg17|chr6 (118986711-118987215)
               

               
               108-619, gnl|Mm7|chr10 (53160841-53161323)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-619, gnl|bosTau2|chr9 (16247112-16247625)
               

               
               108-619, gnl|Hg17|chr6 (118986711-118987215)
               

               
               108-619, gnl|Mm7|chr10 (53160841-53161323)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	108-619, gnl\|bosTau2\|chr9 (16247112-16247625)
	108-619, gnl\|Hg17\|chr6 (118986711-118987215)
	108-619, gnl\|Mm7\|chr10 (53160841-53161323)