Non-Coding RNA Search

rhlv20b_m6.y1

Sequence:


               
               AATATGAGATTACACCAACATACAGTTGGCCAACTTTTAAAGAATCAAATTTGGGGTTAT
AAAAAATGCTCTTAATAAAGAGCAGAGCTGTTGATTGCCAGTGGGATGGTGGCTTTGCAG
TCTTGATAGGACTGCTCTTTGGACGTTGAAGTAAATTAAGGGTAAATTTTGGTTGCATCT
GTGAGTGCGTGCATTCGGAGATGCTCTATGTTGGTGTAGTTGGGCAGCGCTCCTTTACAA
CGCTCTGTGCACGTGGCATTTCCTCCACTTTCACGTTTGTTTAATGATCTGTCTCCTGAA
TGCAGTTTGAACTCTGTGTTTTGCGGTCAAGAACTTAAAAGTAATACCCAACATTTGAGA
TGCAACGGCACAGTCAGTGGGCAGAGTGCCGTTGTTGTCTAAAATGTTATTATTTCTTAC
TTTTAAGATTATCAAAAATCTTTACAAACTTGCCTTATGACATGATACTTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATGAGATTACACCAACATACAGTTGGCCAACTTTTAAAGAATCAAATTTGGGGTTAT
AAAAAATGCTCTTAATAAAGAGCAGAGCTGTTGATTGCCAGTGGGATGGTGGCTTTGCAG
TCTTGATAGGACTGCTCTTTGGACGTTGAAGTAAATTAAGGGTAAATTTTGGTTGCATCT
GTGAGTGCGTGCATTCGGAGATGCTCTATGTTGGTGTAGTTGGGCAGCGCTCCTTTACAA
CGCTCTGTGCACGTGGCATTTCCTCCACTTTCACGTTTGTTTAATGATCTGTCTCCTGAA
TGCAGTTTGAACTCTGTGTTTTGCGGTCAAGAACTTAAAAGTAATACCCAACATTTGAGA
TGCAACGGCACAGTCAGTGGGCAGAGTGCCGTTGTTGTCTAAAATGTTATTATTTCTTAC
TTTTAAGATTATCAAAAATCTTTACAAACTTGCCTTATGACATGATACTTAATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               338-457, + strand, RNAz p=0.999454

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               338-457, + strand, RNAz p=0.999454

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               358-451, + strand, RNAmicro p=0.999998
               

               
               353-485, - strand, RNAmicro p=0.999943

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               358-451, + strand, RNAmicro p=0.999998
               

               
               353-485, - strand, RNAmicro p=0.999943

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-474, gnl|bosTau2|chr12 (26578030-26577560)
               

               
               3-474, gnl|Hg17|chr13 (75310707-75311174)
               

               
               3-474, gnl|Mm7|chr14 (96332156-96332629)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-474, gnl|bosTau2|chr12 (26578030-26577560)
               

               
               3-474, gnl|Hg17|chr13 (75310707-75311174)
               

               
               3-474, gnl|Mm7|chr14 (96332156-96332629)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	358-451, + strand, RNAmicro p=0.999998
	353-485, - strand, RNAmicro p=0.999943

	3-474, gnl\|bosTau2\|chr12 (26578030-26577560)
	3-474, gnl\|Hg17\|chr13 (75310707-75311174)
	3-474, gnl\|Mm7\|chr14 (96332156-96332629)