Non-Coding RNA Search

rhlv24b_g14.y1

Sequence:


               
               TTTTTTTTTTTTTTTTTCAACATGGAATCCAGTAACTTCTGAACCGCCGTCATAAACTGG
AGCATCCCAAGTTAGTGATATGCCATCAGAAGTCACATTGTATGTAACTGGCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTCAACATGGAATCCAGTAACTTCTGAACCGCCGTCATAAACTGG
AGCATCCCAAGTTAGTGATATGCCATCAGAAGTCACATTGTATGTAACTGGCTTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-116, - strand, RNAz p=0.59899
               

               
               26-116, - strand, RNAz p=0.956442

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-116, - strand, RNAz p=0.59899
               

               
               26-116, - strand, RNAz p=0.956442

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               2-116, gnl|bosTau2|chr2 (7852937-7852823)
               

               
               2-116, gnl|canFam2|chr36 (25199778-25200185)
               

               
               2-116, gnl|danRer3|chr9 (37659705-37660112)
               

               
               2-116, gnl|dasNov1|scaffold_2524 (56847-56440)
               

               
               2-116, gnl|echTel1|scaffold_317123 (342795-342388)
               

               
               2-116, gnl|fr1|chrUn (199954476-199954883)
               

               
               2-116, gnl|galGal2|chr7 (16162271-16161864)
               

               
               2-116, gnl|hg17|chr2 (179241941-179242348)
               

               
               2-116, gnl|Hg17|chr2 (179242034-179242148)
               

               
               2-116, gnl|loxAfr1|scaffold_10764 (75448-75855)
               

               
               2-116, gnl|mm7|chr2 (76572916-76573323)
               

               
               2-116, gnl|Mm7|chr2 (76573009-76573123)
               

               
               2-116, gnl|monDom2|scaffold_2 (79398304-79398711)
               

               
               2-116, gnl|oryCun1|scaffold_174430 (45764-46171)
               

               
               2-116, gnl|panTro1|chr13 (69028103-69028510)
               

               
               2-116, gnl|rheMac2|chr12 (42202873-42203280)
               

               
               2-116, gnl|rn3|chr3 (59326239-59326646)
               

               
               2-116, gnl|tetNig1|chrUn_random (42024883-42024476)
               

               
               2-116, gnl|xenTro1|scaffold_546 (328877-329284)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-116, gnl|bosTau2|chr2 (7852937-7852823)
               

               
               2-116, gnl|canFam2|chr36 (25199778-25200185)
               

               
               2-116, gnl|danRer3|chr9 (37659705-37660112)
               

               
               2-116, gnl|dasNov1|scaffold_2524 (56847-56440)
               

               
               2-116, gnl|echTel1|scaffold_317123 (342795-342388)
               

               
               2-116, gnl|fr1|chrUn (199954476-199954883)
               

               
               2-116, gnl|galGal2|chr7 (16162271-16161864)
               

               
               2-116, gnl|hg17|chr2 (179241941-179242348)
               

               
               2-116, gnl|Hg17|chr2 (179242034-179242148)
               

               
               2-116, gnl|loxAfr1|scaffold_10764 (75448-75855)
               

               
               2-116, gnl|mm7|chr2 (76572916-76573323)
               

               
               2-116, gnl|Mm7|chr2 (76573009-76573123)
               

               
               2-116, gnl|monDom2|scaffold_2 (79398304-79398711)
               

               
               2-116, gnl|oryCun1|scaffold_174430 (45764-46171)
               

               
               2-116, gnl|panTro1|chr13 (69028103-69028510)
               

               
               2-116, gnl|rheMac2|chr12 (42202873-42203280)
               

               
               2-116, gnl|rn3|chr3 (59326239-59326646)
               

               
               2-116, gnl|tetNig1|chrUn_random (42024883-42024476)
               

               
               2-116, gnl|xenTro1|scaffold_546 (328877-329284)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	2-116, - strand, RNAz p=0.59899
	26-116, - strand, RNAz p=0.956442

	2-116, gnl\|bosTau2\|chr2 (7852937-7852823)
	2-116, gnl\|canFam2\|chr36 (25199778-25200185)
	2-116, gnl\|danRer3\|chr9 (37659705-37660112)
	2-116, gnl\|dasNov1\|scaffold_2524 (56847-56440)
	2-116, gnl\|echTel1\|scaffold_317123 (342795-342388)
	2-116, gnl\|fr1\|chrUn (199954476-199954883)
	2-116, gnl\|galGal2\|chr7 (16162271-16161864)
	2-116, gnl\|hg17\|chr2 (179241941-179242348)
	2-116, gnl\|Hg17\|chr2 (179242034-179242148)
	2-116, gnl\|loxAfr1\|scaffold_10764 (75448-75855)
	2-116, gnl\|mm7\|chr2 (76572916-76573323)
	2-116, gnl\|Mm7\|chr2 (76573009-76573123)
	2-116, gnl\|monDom2\|scaffold_2 (79398304-79398711)
	2-116, gnl\|oryCun1\|scaffold_174430 (45764-46171)
	2-116, gnl\|panTro1\|chr13 (69028103-69028510)
	2-116, gnl\|rheMac2\|chr12 (42202873-42203280)
	2-116, gnl\|rn3\|chr3 (59326239-59326646)
	2-116, gnl\|tetNig1\|chrUn_random (42024883-42024476)
	2-116, gnl\|xenTro1\|scaffold_546 (328877-329284)