Non-Coding RNA Search

rhlv28b_g20.y1

Sequence:


               
               GCGCTTCGGGATCGGCCGAACCGGGTGCAGACATGGCGAAGTCCAAGAACCACACCACGC
ATAATCAGTCCCGAAAATGGCACAGAAACGGCATCAAGAAACCCCGATCACAACGATATG
AATCTCTTAAGGGGGTGGACCCCAAGTTCCTGCGGAATATGCGCTTTGCCAAGAAGCACA
ACAAGAAGGGCCTAAAGAAGATGCAGGCCAACAACGCCAAGGCCATGAGTGCACGTGCTG
AAGCTATCAAGGCTCTTGTAAAACCCAAGGAGGTCAAGCCTAACATCCCAAAGGGTGGCA
GCCGCAAGCTCAGTCGACTTGCGTACATTGCTCACCCCAAACTTGGGAAACGTGCTCGTG
CTCGCATCGCCAAGGGCCTCAGGTTCTGCCGGCCAAAGTCCCAGGCCAAGGCTCAGTCCA
AGGCCAAGGCCACAGCTGGAGGTACAGCTGCAGCTCCAGTTCCTCCAGCCTCGGCTCCCA
AAGGTGCCCAGGCCCCCACAAAAGCTCCACAATAGAGGTGTTTATCTGCCAATGTGAGGA
CAGAAGGACTGGTGTGATCCCTGGGCTGCTGTCTATACGGGGCTGGTGTCCTGTGTTTGT
ACAAATAAACCTGCCTCAGGATCTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTTCGGGATCGGCCGAACCGGGTGCAGACATGGCGAAGTCCAAGAACCACACCACGC
ATAATCAGTCCCGAAAATGGCACAGAAACGGCATCAAGAAACCCCGATCACAACGATATG
AATCTCTTAAGGGGGTGGACCCCAAGTTCCTGCGGAATATGCGCTTTGCCAAGAAGCACA
ACAAGAAGGGCCTAAAGAAGATGCAGGCCAACAACGCCAAGGCCATGAGTGCACGTGCTG
AAGCTATCAAGGCTCTTGTAAAACCCAAGGAGGTCAAGCCTAACATCCCAAAGGGTGGCA
GCCGCAAGCTCAGTCGACTTGCGTACATTGCTCACCCCAAACTTGGGAAACGTGCTCGTG
CTCGCATCGCCAAGGGCCTCAGGTTCTGCCGGCCAAAGTCCCAGGCCAAGGCTCAGTCCA
AGGCCAAGGCCACAGCTGGAGGTACAGCTGCAGCTCCAGTTCCTCCAGCCTCGGCTCCCA
AAGGTGCCCAGGCCCCCACAAAAGCTCCACAATAGAGGTGTTTATCTGCCAATGTGAGGA
CAGAAGGACTGGTGTGATCCCTGGGCTGCTGTCTATACGGGGCTGGTGTCCTGTGTTTGT
ACAAATAAACCTGCCTCAGGATCTGTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               RL29_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               RL29_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-510, - strand, RNAz p=0.98977

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-510, - strand, RNAz p=0.98977

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-628, gnl|bosTau2|chr16 (52722896-52722310)
               

               
               1-628, gnl|Hg17|chr3 (37033514-37032897)
               

               
               1-628, gnl|Mm7|chr1 (134407834-134408467)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-628, gnl|bosTau2|chr16 (52722896-52722310)
               

               
               1-628, gnl|Hg17|chr3 (37033514-37032897)
               

               
               1-628, gnl|Mm7|chr1 (134407834-134408467)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	1-628, gnl\|bosTau2\|chr16 (52722896-52722310)
	1-628, gnl\|Hg17\|chr3 (37033514-37032897)
	1-628, gnl\|Mm7\|chr1 (134407834-134408467)