Non-Coding RNA Search

rhlv29b_h17.y1

Sequence:


               
               CCACACTCTCTGCAAGGCCTCCCCGTCACCGTCGCTCAGCAGCTACAGCGACCCGGACTC
TGGCCATTACTGCCAGCTGCAGCCTCCTGTCCGTGGCAGCCGAGAATGGGCAGCAGCTGA
GGCCTCCAACCGCCAGGCCGTGAGCTATGGGGAGAGGCTAAAGGAACTGTCAGAAAATGG
GGCCCCTGAGGGGGACTGGGGCAAGACCTTCACAGTCCCTGTCGTGGAAGTCACCTCTTC
CTTCAACCCGGCTACCTTCCAGTCACTACTGATTCCCAAGGATAACCGGCCACTGGAGGT
GGGCCTCCTGCGTAAGGTCAAGGAGCTGCTGGCAGAGGTTGATGCCCGGACGCTGGCCCG
GCACGTCACCAAAGTTGACTGCCTGGTAGGTGCTGGGTGCATACAGGGCAGGGGCAGCAC
CTCTATCCCCTGGCTTTGGGATAGGGGTCAGGGTGGGGAGGAGCTGGCCCCTAAATTCCC
AAGGATAGTGAGTGGGTCTGGATTCTCACTTTATGGCTGTCCCTCACTTGCCGTGTGACT
CTGATTAATCACTTTACCTCTCTGGGCCTCCATTTTCTCCTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACACTCTCTGCAAGGCCTCCCCGTCACCGTCGCTCAGCAGCTACAGCGACCCGGACTC
TGGCCATTACTGCCAGCTGCAGCCTCCTGTCCGTGGCAGCCGAGAATGGGCAGCAGCTGA
GGCCTCCAACCGCCAGGCCGTGAGCTATGGGGAGAGGCTAAAGGAACTGTCAGAAAATGG
GGCCCCTGAGGGGGACTGGGGCAAGACCTTCACAGTCCCTGTCGTGGAAGTCACCTCTTC
CTTCAACCCGGCTACCTTCCAGTCACTACTGATTCCCAAGGATAACCGGCCACTGGAGGT
GGGCCTCCTGCGTAAGGTCAAGGAGCTGCTGGCAGAGGTTGATGCCCGGACGCTGGCCCG
GCACGTCACCAAAGTTGACTGCCTGGTAGGTGCTGGGTGCATACAGGGCAGGGGCAGCAC
CTCTATCCCCTGGCTTTGGGATAGGGGTCAGGGTGGGGAGGAGCTGGCCCCTAAATTCCC
AAGGATAGTGAGTGGGTCTGGATTCTCACTTTATGGCTGTCCCTCACTTGCCGTGTGACT
CTGATTAATCACTTTACCTCTCTGGGCCTCCATTTTCTCCTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-319, - strand, RNAz p=0.94041
               

               
               360-473, + strand, RNAz p=0.999813

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-319, - strand, RNAz p=0.94041
               

               
               360-473, + strand, RNAz p=0.999813

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               400-497, + strand, RNAmicro p=0.999997
               

               
               3-135, - strand, RNAmicro p=0.987607

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               400-497, + strand, RNAmicro p=0.999997
               

               
               3-135, - strand, RNAmicro p=0.987607

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-594, gnl|bosTau2|chr11 (79622600-79622007)
               

               
               1-594, gnl|Hg17|chr9 (127586781-127585912)
               

               
               1-594, gnl|Mm7|chr2 (32756615-32757196)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-594, gnl|bosTau2|chr11 (79622600-79622007)
               

               
               1-594, gnl|Hg17|chr9 (127586781-127585912)
               

               
               1-594, gnl|Mm7|chr2 (32756615-32757196)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	120-319, - strand, RNAz p=0.94041
	360-473, + strand, RNAz p=0.999813

	400-497, + strand, RNAmicro p=0.999997
	3-135, - strand, RNAmicro p=0.987607

	1-594, gnl\|bosTau2\|chr11 (79622600-79622007)
	1-594, gnl\|Hg17\|chr9 (127586781-127585912)
	1-594, gnl\|Mm7\|chr2 (32756615-32757196)