Non-Coding RNA Search

rhlv37b_l3.y1

Sequence:


               
               CCTAGGGAATCAAGTCATGTCTCCTCCATCAGACGGCAAATTCTTAAAAGTGTAGGGGCT
GTGTTTCCATCAAACTGGAAATTTTCAGAACATGGGGGCCACGTCTCCCCCATCAGATTG
TTGGGAGCCGTGTCCTCCAGGTCATGTCTCTTCTGTCAGACCGAGAGACCGCAGAATGTA
GGGGCTATAATTTCCCATCAGACTGAAAGATTCCAGAGGCGGGGAGGTCATGTCTCCTCC
ATCAGATTGGAAATTTTGGATTTTTTTTATTGGGCTGAGTCTTTCCGGTCAGGGTGGGGG
ACCCCAGAAATTGAATGGGGGCATCTACCCATCAGACTGGAAATTCCTAGAGAGTGGGGG
GGGCCTGTACTCCCCCATCAGATTGGGAGTACTCCAAAGGTGGGAACTGTGTCTCCCCCA
TCAGACTAGGAATTCTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAGGGAATCAAGTCATGTCTCCTCCATCAGACGGCAAATTCTTAAAAGTGTAGGGGCT
GTGTTTCCATCAAACTGGAAATTTTCAGAACATGGGGGCCACGTCTCCCCCATCAGATTG
TTGGGAGCCGTGTCCTCCAGGTCATGTCTCTTCTGTCAGACCGAGAGACCGCAGAATGTA
GGGGCTATAATTTCCCATCAGACTGAAAGATTCCAGAGGCGGGGAGGTCATGTCTCCTCC
ATCAGATTGGAAATTTTGGATTTTTTTTATTGGGCTGAGTCTTTCCGGTCAGGGTGGGGG
ACCCCAGAAATTGAATGGGGGCATCTACCCATCAGACTGGAAATTCCTAGAGAGTGGGGG
GGGCCTGTACTCCCCCATCAGATTGGGAGTACTCCAAAGGTGGGAACTGTGTCTCCCCCA
TCAGACTAGGAATTCTTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-140, - strand, RNAz p=0.920652
               

               
               290-444, + strand, RNAz p=0.999977

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-140, - strand, RNAz p=0.920652
               

               
               290-444, + strand, RNAz p=0.999977

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               347-454, + strand, RNAmicro p=0.955207

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               347-454, + strand, RNAmicro p=0.955207

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-449, gnl|bosTau2|chr6 (49121377-49121825)
               

               
               1-449, gnl|Hg17|chr19 (49902713-49902262)
               

               
               1-449, gnl|Mm7|chr7 (17536519-17537080)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-449, gnl|bosTau2|chr6 (49121377-49121825)
               

               
               1-449, gnl|Hg17|chr19 (49902713-49902262)
               

               
               1-449, gnl|Mm7|chr7 (17536519-17537080)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	40-140, - strand, RNAz p=0.920652
	290-444, + strand, RNAz p=0.999977

	1-449, gnl\|bosTau2\|chr6 (49121377-49121825)
	1-449, gnl\|Hg17\|chr19 (49902713-49902262)
	1-449, gnl\|Mm7\|chr7 (17536519-17537080)