Non-Coding RNA Search

rhyp03c_c5.y1

Sequence:


               
               GAACAAAGAAGCATGTAGCCTGGTCGCTGCTATTAGCTATCTTGTGAACACATGGAAGGC
CTACCAGAGGATGGAGCTGACAAATGGAAGAGGCAGAGCCAAGAGAATTACAGAGAAATG
GAACCATATTCCTGATCATACCAGGCCTGAAGTCTTCCCTCCCTATGTATGGACTTGTCA
GTTAAGTGAGCCAATAAATTGCGTTTATTATTTAAACCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACAAAGAAGCATGTAGCCTGGTCGCTGCTATTAGCTATCTTGTGAACACATGGAAGGC
CTACCAGAGGATGGAGCTGACAAATGGAAGAGGCAGAGCCAAGAGAATTACAGAGAAATG
GAACCATATTCCTGATCATACCAGGCCTGAAGTCTTCCCTCCCTATGTATGGACTTGTCA
GTTAAGTGAGCCAATAAATTGCGTTTATTATTTAAACCAAAAAAAAAAA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-219, gnl|bosTau2|chrX (532519-532305)
               

               
               1-219, gnl|canFam2|chrX (45530379-45530935)
               

               
               1-219, gnl|canFam2|chrX (45073772-45074199)
               

               
               1-219, gnl|hg17|chrX (53727499-53728056)
               

               
               1-219, gnl|hg17|chrX (53276249-53276685)
               

               
               1-219, gnl|Hg17|chrX (53276511-53276300)
               

               
               1-219, gnl|mm7|chrX (146836958-146836456)
               

               
               1-219, gnl|mm7|chrX (146836951-146836576)
               

               
               1-219, gnl|oryCun1|scaffold_119917 (6597-7140)
               

               
               1-219, gnl|oryCun1|scaffold_119917 (6602-7014)
               

               
               1-219, gnl|panTro1|chrX (54977407-54977960)
               

               
               1-219, gnl|panTro1|chrX (54524235-54524671)
               

               
               1-219, gnl|rheMac2|chrX (52143420-52143991)
               

               
               1-219, gnl|rheMac2|chrX (51690137-51690573)
               

               
               1-219, gnl|rn3|chrX (41635045-41634549)
               

               
               1-219, gnl|rn3|chrX (41635038-41634664)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-219, gnl|bosTau2|chrX (532519-532305)
               

               
               1-219, gnl|canFam2|chrX (45530379-45530935)
               

               
               1-219, gnl|canFam2|chrX (45073772-45074199)
               

               
               1-219, gnl|hg17|chrX (53727499-53728056)
               

               
               1-219, gnl|hg17|chrX (53276249-53276685)
               

               
               1-219, gnl|Hg17|chrX (53276511-53276300)
               

               
               1-219, gnl|mm7|chrX (146836958-146836456)
               

               
               1-219, gnl|mm7|chrX (146836951-146836576)
               

               
               1-219, gnl|oryCun1|scaffold_119917 (6597-7140)
               

               
               1-219, gnl|oryCun1|scaffold_119917 (6602-7014)
               

               
               1-219, gnl|panTro1|chrX (54977407-54977960)
               

               
               1-219, gnl|panTro1|chrX (54524235-54524671)
               

               
               1-219, gnl|rheMac2|chrX (52143420-52143991)
               

               
               1-219, gnl|rheMac2|chrX (51690137-51690573)
               

               
               1-219, gnl|rn3|chrX (41635045-41634549)
               

               
               1-219, gnl|rn3|chrX (41635038-41634664)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-219, gnl\|bosTau2\|chrX (532519-532305)
	1-219, gnl\|canFam2\|chrX (45530379-45530935)
	1-219, gnl\|canFam2\|chrX (45073772-45074199)
	1-219, gnl\|hg17\|chrX (53727499-53728056)
	1-219, gnl\|hg17\|chrX (53276249-53276685)
	1-219, gnl\|Hg17\|chrX (53276511-53276300)
	1-219, gnl\|mm7\|chrX (146836958-146836456)
	1-219, gnl\|mm7\|chrX (146836951-146836576)
	1-219, gnl\|oryCun1\|scaffold_119917 (6597-7140)
	1-219, gnl\|oryCun1\|scaffold_119917 (6602-7014)
	1-219, gnl\|panTro1\|chrX (54977407-54977960)
	1-219, gnl\|panTro1\|chrX (54524235-54524671)
	1-219, gnl\|rheMac2\|chrX (52143420-52143991)
	1-219, gnl\|rheMac2\|chrX (51690137-51690573)
	1-219, gnl\|rn3\|chrX (41635045-41634549)
	1-219, gnl\|rn3\|chrX (41635038-41634664)