Non-Coding RNA Search

rhyp07c_k15.y1

Sequence:


               
               GCCGGGGCTGATGAGCCTGGCCCTGAGGGCCTCACCTCCACCTCCCTGCTGGACCTCCTG
CTGCCCACTGGTCTGGAGCCACTGGACTCAGAGGAGCCCAGCGAGGCCGTGGGGCTGGGG
GCTGGCCTGGGAGCTCCTGGCTCAGGCTTCCCCAGCGAAGAGAGTGAAGAGTCCCGCATC
CTGCAGCCGCCACAGTACTTCTGGGAAGAAGAGGAGGAGCTGAATGCATCCAGCCTGGAC
CTGGGACCCACCGCAGATTATGCTTTTCCGGACCTGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGGGCTGATGAGCCTGGCCCTGAGGGCCTCACCTCCACCTCCCTGCTGGACCTCCTG
CTGCCCACTGGTCTGGAGCCACTGGACTCAGAGGAGCCCAGCGAGGCCGTGGGGCTGGGG
GCTGGCCTGGGAGCTCCTGGCTCAGGCTTCCCCAGCGAAGAGAGTGAAGAGTCCCGCATC
CTGCAGCCGCCACAGTACTTCTGGGAAGAAGAGGAGGAGCTGAATGCATCCAGCCTGGAC
CTGGGACCCACCGCAGATTATGCTTTTCCGGACCTGACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8CAE9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CAE9_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-159, + strand, RNAz p=0.922643
               

               
               70-169, - strand, RNAz p=0.657509

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, + strand, RNAz p=0.922643
               

               
               70-169, - strand, RNAz p=0.657509

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               26-131, - strand, RNAmicro p=0.988764

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               26-131, - strand, RNAmicro p=0.988764

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-256, gnl|bosTau2|chr22 (47750521-47750266)
               

               
               1-256, gnl|canFam2|chr20 (4727026-4727369)
               

               
               1-256, gnl|dasNov1|scaffold_8586 (32136-32482)
               

               
               1-256, gnl|echTel1|scaffold_4376 (1245-915)
               

               
               1-256, gnl|galGal2|chr12 (9741468-9741125)
               

               
               1-256, gnl|hg17|chr3 (128840736-128841083)
               

               
               1-256, gnl|Hg17|chr3 (128840809-128841064)
               

               
               1-256, gnl|loxAfr1|scaffold_11519 (46366-46722)
               

               
               1-256, gnl|mm7|chr6 (88940428-88940093)
               

               
               1-256, gnl|Mm7|chr6 (88940359-88940110)
               

               
               1-256, gnl|monDom2|scaffold_5 (46035049-46035395)
               

               
               1-256, gnl|oryCun1|scaffold_94948 (3376-3713)
               

               
               1-256, gnl|panTro1|chr2_random (8703913-8703566)
               

               
               1-256, gnl|rheMac2|chr11 (87203892-87203546)
               

               
               1-256, gnl|rn3|chr4 (123204094-123203759)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-256, gnl|bosTau2|chr22 (47750521-47750266)
               

               
               1-256, gnl|canFam2|chr20 (4727026-4727369)
               

               
               1-256, gnl|dasNov1|scaffold_8586 (32136-32482)
               

               
               1-256, gnl|echTel1|scaffold_4376 (1245-915)
               

               
               1-256, gnl|galGal2|chr12 (9741468-9741125)
               

               
               1-256, gnl|hg17|chr3 (128840736-128841083)
               

               
               1-256, gnl|Hg17|chr3 (128840809-128841064)
               

               
               1-256, gnl|loxAfr1|scaffold_11519 (46366-46722)
               

               
               1-256, gnl|mm7|chr6 (88940428-88940093)
               

               
               1-256, gnl|Mm7|chr6 (88940359-88940110)
               

               
               1-256, gnl|monDom2|scaffold_5 (46035049-46035395)
               

               
               1-256, gnl|oryCun1|scaffold_94948 (3376-3713)
               

               
               1-256, gnl|panTro1|chr2_random (8703913-8703566)
               

               
               1-256, gnl|rheMac2|chr11 (87203892-87203546)
               

               
               1-256, gnl|rn3|chr4 (123204094-123203759)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-159, + strand, RNAz p=0.922643
	70-169, - strand, RNAz p=0.657509

	1-256, gnl\|bosTau2\|chr22 (47750521-47750266)
	1-256, gnl\|canFam2\|chr20 (4727026-4727369)
	1-256, gnl\|dasNov1\|scaffold_8586 (32136-32482)
	1-256, gnl\|echTel1\|scaffold_4376 (1245-915)
	1-256, gnl\|galGal2\|chr12 (9741468-9741125)
	1-256, gnl\|hg17\|chr3 (128840736-128841083)
	1-256, gnl\|Hg17\|chr3 (128840809-128841064)
	1-256, gnl\|loxAfr1\|scaffold_11519 (46366-46722)
	1-256, gnl\|mm7\|chr6 (88940428-88940093)
	1-256, gnl\|Mm7\|chr6 (88940359-88940110)
	1-256, gnl\|monDom2\|scaffold_5 (46035049-46035395)
	1-256, gnl\|oryCun1\|scaffold_94948 (3376-3713)
	1-256, gnl\|panTro1\|chr2_random (8703913-8703566)
	1-256, gnl\|rheMac2\|chr11 (87203892-87203546)
	1-256, gnl\|rn3\|chr4 (123204094-123203759)