Non-Coding RNA Search

rhyp08c_k16.y1

Sequence:


               
               AGGTCGACGTCTTCTTGAGAGAGAAACATTCCTTTCGGAGGTTTCCTTTTGCTCTGTTCT
TAGCTTGTGTACTGTGTTTTTCTTTTTTGATCTGAGGAATTGTCTCAGTAGGGGGAACCT
GCGTGATACACATATTTGATAAATGAGAAAATAAAAATTAAAATGCCAAAAAAAAAAAAA
AAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTCGACGTCTTCTTGAGAGAGAAACATTCCTTTCGGAGGTTTCCTTTTGCTCTGTTCT
TAGCTTGTGTACTGTGTTTTTCTTTTTTGATCTGAGGAATTGTCTCAGTAGGGGGAACCT
GCGTGATACACATATTTGATAAATGAGAAAATAAAAATTAAAATGCCAAAAAAAAAAAAA
AAAAAAAAAA

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               4-169, gnl|bosTau2|chr21 (46862379-46862211)
               

               
               4-169, gnl|canFam2|chr8 (73661976-73662143)
               

               
               4-169, gnl|danRer3|chr16 (30401976-30402104)
               

               
               4-169, gnl|dasNov1|scaffold_241716 (572-438)
               

               
               4-169, gnl|echTel1|scaffold_288321 (14104-13960)
               

               
               4-169, gnl|galGal2|chr5 (46561764-46561897)
               

               
               4-169, gnl|hg17|chr14 (102250469-102250591)
               

               
               4-169, gnl|Hg17|chr14 (102250628-102250468)
               

               
               4-169, gnl|loxAfr1|scaffold_14880 (23891-23757)
               

               
               4-169, gnl|mm7|chr12 (108619975-108620107)
               

               
               4-169, gnl|Mm7|chr12 (108620144-108619974)
               

               
               4-169, gnl|monDom2|scaffold_6 (86414274-86414419)
               

               
               4-169, gnl|oryCun1|scaffold_179037 (12588-12461)
               

               
               4-169, gnl|panTro1|chr15 (102858891-102859014)
               

               
               4-169, gnl|rheMac2|chr7 (166009322-166009447)
               

               
               4-169, gnl|rn3|chr6 (135854929-135855056)
               

               
               4-169, gnl|xenTro1|scaffold_127 (787283-787395)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-169, gnl|bosTau2|chr21 (46862379-46862211)
               

               
               4-169, gnl|canFam2|chr8 (73661976-73662143)
               

               
               4-169, gnl|danRer3|chr16 (30401976-30402104)
               

               
               4-169, gnl|dasNov1|scaffold_241716 (572-438)
               

               
               4-169, gnl|echTel1|scaffold_288321 (14104-13960)
               

               
               4-169, gnl|galGal2|chr5 (46561764-46561897)
               

               
               4-169, gnl|hg17|chr14 (102250469-102250591)
               

               
               4-169, gnl|Hg17|chr14 (102250628-102250468)
               

               
               4-169, gnl|loxAfr1|scaffold_14880 (23891-23757)
               

               
               4-169, gnl|mm7|chr12 (108619975-108620107)
               

               
               4-169, gnl|Mm7|chr12 (108620144-108619974)
               

               
               4-169, gnl|monDom2|scaffold_6 (86414274-86414419)
               

               
               4-169, gnl|oryCun1|scaffold_179037 (12588-12461)
               

               
               4-169, gnl|panTro1|chr15 (102858891-102859014)
               

               
               4-169, gnl|rheMac2|chr7 (166009322-166009447)
               

               
               4-169, gnl|rn3|chr6 (135854929-135855056)
               

               
               4-169, gnl|xenTro1|scaffold_127 (787283-787395)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	4-169, gnl\|bosTau2\|chr21 (46862379-46862211)
	4-169, gnl\|canFam2\|chr8 (73661976-73662143)
	4-169, gnl\|danRer3\|chr16 (30401976-30402104)
	4-169, gnl\|dasNov1\|scaffold_241716 (572-438)
	4-169, gnl\|echTel1\|scaffold_288321 (14104-13960)
	4-169, gnl\|galGal2\|chr5 (46561764-46561897)
	4-169, gnl\|hg17\|chr14 (102250469-102250591)
	4-169, gnl\|Hg17\|chr14 (102250628-102250468)
	4-169, gnl\|loxAfr1\|scaffold_14880 (23891-23757)
	4-169, gnl\|mm7\|chr12 (108619975-108620107)
	4-169, gnl\|Mm7\|chr12 (108620144-108619974)
	4-169, gnl\|monDom2\|scaffold_6 (86414274-86414419)
	4-169, gnl\|oryCun1\|scaffold_179037 (12588-12461)
	4-169, gnl\|panTro1\|chr15 (102858891-102859014)
	4-169, gnl\|rheMac2\|chr7 (166009322-166009447)
	4-169, gnl\|rn3\|chr6 (135854929-135855056)
	4-169, gnl\|xenTro1\|scaffold_127 (787283-787395)