Non-Coding RNA Search

rhyp09c_k2.y1

Sequence:


               
               AGCACTAGCCACAGAGCTCTGTCCTGTGCACCATCAGTCAATTCTGGGAGCTAGTTAGTG
TTCACAGTGGAAGCCAGCTGAAATGGAGAGTCTGTTTTGCATATTGCTGCCTTAGCTCCA
CAACTCGATTAGCTAGAGGCAGAGACCAAGGAATTAGAATTCATCTGTTAATAGTTAAAT
TGACCATTAAAATTAATGATTAAGAGAATAATTAAGATTAATGGTTAGATTAATGTTGAA
ACAACCAATGCATTTCCTCCAGAGCATTAAGAATGTTGTCGAggagttcccgtcgtggct
cagtggttaacgaatccgactaggaaccatgaggttgcgggttcgatctctggccttgct
cagtg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACTAGCCACAGAGCTCTGTCCTGTGCACCATCAGTCAATTCTGGGAGCTAGTTAGTG
TTCACAGTGGAAGCCAGCTGAAATGGAGAGTCTGTTTTGCATATTGCTGCCTTAGCTCCA
CAACTCGATTAGCTAGAGGCAGAGACCAAGGAATTAGAATTCATCTGTTAATAGTTAAAT
TGACCATTAAAATTAATGATTAAGAGAATAATTAAGATTAATGGTTAGATTAATGTTGAA
ACAACCAATGCATTTCCTCCAGAGCATTAAGAATGTTGTCGAggagttcccgtcgtggct
cagtggttaacgaatccgactaggaaccatgaggttgcgggttcgatctctggccttgct
cagtg

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-277, gnl|bosTau2|chr29 (2663689-2663966)
               

               
               1-277, gnl|canFam2|chr21 (14225730-14224952)
               

               
               1-277, gnl|dasNov1|scaffold_6414 (92911-92127)
               

               
               1-277, gnl|echTel1|scaffold_231546 (1355-700)
               

               
               1-277, gnl|hg17|chr11 (88178949-88179726)
               

               
               1-277, gnl|Hg17|chr11 (88179448-88179186)
               

               
               1-277, gnl|panTro1|chr9 (90014834-90015610)
               

               
               1-277, gnl|rheMac2|chr14 (86992200-86992958)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-277, gnl|bosTau2|chr29 (2663689-2663966)
               

               
               1-277, gnl|canFam2|chr21 (14225730-14224952)
               

               
               1-277, gnl|dasNov1|scaffold_6414 (92911-92127)
               

               
               1-277, gnl|echTel1|scaffold_231546 (1355-700)
               

               
               1-277, gnl|hg17|chr11 (88178949-88179726)
               

               
               1-277, gnl|Hg17|chr11 (88179448-88179186)
               

               
               1-277, gnl|panTro1|chr9 (90014834-90015610)
               

               
               1-277, gnl|rheMac2|chr14 (86992200-86992958)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-277, gnl\|bosTau2\|chr29 (2663689-2663966)
	1-277, gnl\|canFam2\|chr21 (14225730-14224952)
	1-277, gnl\|dasNov1\|scaffold_6414 (92911-92127)
	1-277, gnl\|echTel1\|scaffold_231546 (1355-700)
	1-277, gnl\|hg17\|chr11 (88178949-88179726)
	1-277, gnl\|Hg17\|chr11 (88179448-88179186)
	1-277, gnl\|panTro1\|chr9 (90014834-90015610)
	1-277, gnl\|rheMac2\|chr14 (86992200-86992958)