Non-Coding RNA Search

rhyp11c_k1.y1

Sequence:


               
               CTGCAATGTTTAACAGAAAGTCAATTATAAATTTGTGCTAAAAGAATAACAATACTAGTA
TTTGCCTGGCACCTTCCTCTGGCATGACATCCCCTGAAGGTAATCTCATATCCCCGACAG
TCACAGAGCACTCAGAATGTGCTAAGTGATCTACAGAACCATCATGACGAGCCTCTCAGG
GGACAGGTGCTTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAATGTTTAACAGAAAGTCAATTATAAATTTGTGCTAAAAGAATAACAATACTAGTA
TTTGCCTGGCACCTTCCTCTGGCATGACATCCCCTGAAGGTAATCTCATATCCCCGACAG
TCACAGAGCACTCAGAATGTGCTAAGTGATCTACAGAACCATCATGACGAGCCTCTCAGG
GGACAGGTGCTTGTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               69-187, - strand, RNAz p=0.867105
               

               
               71-187, - strand, RNAz p=0.986421

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-187, - strand, RNAz p=0.867105
               

               
               71-187, - strand, RNAz p=0.986421

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-187, gnl|bosTau2|chr23 (29420720-29420539)
               

               
               1-187, gnl|canFam2|chr35 (23061868-23062138)
               

               
               1-187, gnl|dasNov1|scaffold_219280 (2987-3258)
               

               
               1-187, gnl|echTel1|scaffold_290167 (37161-36890)
               

               
               1-187, gnl|hg17|chr6 (21632593-21632866)
               

               
               1-187, gnl|Hg17|chr6 (21632746-21632934)
               

               
               1-187, gnl|loxAfr1|scaffold_15292 (27578-27308)
               

               
               1-187, gnl|mm7|chr13 (28379227-28378953)
               

               
               1-187, gnl|Mm7|chr13 (28379072-28378883)
               

               
               1-187, gnl|monDom2|scaffold_3 (111219936-111220202)
               

               
               1-187, gnl|panTro1|chr5 (22036678-22036951)
               

               
               1-187, gnl|rheMac2|chr4 (21506425-21506697)
               

               
               1-187, gnl|rn3|chr17 (42100572-42100844)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-187, gnl|bosTau2|chr23 (29420720-29420539)
               

               
               1-187, gnl|canFam2|chr35 (23061868-23062138)
               

               
               1-187, gnl|dasNov1|scaffold_219280 (2987-3258)
               

               
               1-187, gnl|echTel1|scaffold_290167 (37161-36890)
               

               
               1-187, gnl|hg17|chr6 (21632593-21632866)
               

               
               1-187, gnl|Hg17|chr6 (21632746-21632934)
               

               
               1-187, gnl|loxAfr1|scaffold_15292 (27578-27308)
               

               
               1-187, gnl|mm7|chr13 (28379227-28378953)
               

               
               1-187, gnl|Mm7|chr13 (28379072-28378883)
               

               
               1-187, gnl|monDom2|scaffold_3 (111219936-111220202)
               

               
               1-187, gnl|panTro1|chr5 (22036678-22036951)
               

               
               1-187, gnl|rheMac2|chr4 (21506425-21506697)
               

               
               1-187, gnl|rn3|chr17 (42100572-42100844)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	69-187, - strand, RNAz p=0.867105
	71-187, - strand, RNAz p=0.986421

	1-187, gnl\|bosTau2\|chr23 (29420720-29420539)
	1-187, gnl\|canFam2\|chr35 (23061868-23062138)
	1-187, gnl\|dasNov1\|scaffold_219280 (2987-3258)
	1-187, gnl\|echTel1\|scaffold_290167 (37161-36890)
	1-187, gnl\|hg17\|chr6 (21632593-21632866)
	1-187, gnl\|Hg17\|chr6 (21632746-21632934)
	1-187, gnl\|loxAfr1\|scaffold_15292 (27578-27308)
	1-187, gnl\|mm7\|chr13 (28379227-28378953)
	1-187, gnl\|Mm7\|chr13 (28379072-28378883)
	1-187, gnl\|monDom2\|scaffold_3 (111219936-111220202)
	1-187, gnl\|panTro1\|chr5 (22036678-22036951)
	1-187, gnl\|rheMac2\|chr4 (21506425-21506697)
	1-187, gnl\|rn3\|chr17 (42100572-42100844)