Non-Coding RNA Search

rhyp13c_h4.y1

Sequence:


               
               CTTCGGTTTGAATTAGAAGATGAAGGAAAGGCTATGCTTGCTTCTTTACGCTCAGAACTA
AACCATCAACACGCAGCTGCAATTGACTTGTTACGGCATAATCATCATCAAGAATTGGCA
GCTGCTAAAATGGAATTAGAGAGAAGCATAGACATCAGCAGAAGACAGAGTAAGGAGCAC
ATGTGTAGAATCACAGATCTACAAGACGAAGTAAGGCACAGAGAGCATCACATCTCAGAC
TTGGATAAGGAGGTACAGCACCTTCATGAAAATATAAGTGCCCTAACCAAAGAATGGGAA
TTTAAGGGAAAAGAAATTCTCAGAATACGAAGTGAATCCAACCAACAGATGAGGTTGCAT
GAACAAGATTTAAACAAGAGACTTGAAAAAGAGCTGGATGTCATGACAGCAGACCACCTC
AGAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGGTTTGAATTAGAAGATGAAGGAAAGGCTATGCTTGCTTCTTTACGCTCAGAACTA
AACCATCAACACGCAGCTGCAATTGACTTGTTACGGCATAATCATCATCAAGAATTGGCA
GCTGCTAAAATGGAATTAGAGAGAAGCATAGACATCAGCAGAAGACAGAGTAAGGAGCAC
ATGTGTAGAATCACAGATCTACAAGACGAAGTAAGGCACAGAGAGCATCACATCTCAGAC
TTGGATAAGGAGGTACAGCACCTTCATGAAAATATAAGTGCCCTAACCAAAGAATGGGAA
TTTAAGGGAAAAGAAATTCTCAGAATACGAAGTGAATCCAACCAACAGATGAGGTTGCAT
GAACAAGATTTAAACAAGAGACTTGAAAAAGAGCTGGATGTCATGACAGCAGACCACCTC
AGAGAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61810727|ref|XP_599047.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61810727|ref|XP_599047.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               238-355, - strand, RNAz p=0.538904

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-355, - strand, RNAz p=0.538904

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               166-355, gnl|bosTau2|chr9 (13948303-13948492)
               

               
               166-355, gnl|canFam2|chr1 (61972501-61972682)
               

               
               166-355, gnl|danRer3|chr20 (49143326-49143146)
               

               
               166-355, gnl|dasNov1|scaffold_32772 (5882-6063)
               

               
               166-355, gnl|fr1|chrUn (130958818-130958999)
               

               
               166-355, gnl|galGal2|chr3 (61203811-61203630)
               

               
               166-355, gnl|hg17|chr6 (119337886-119338067)
               

               
               166-355, gnl|Hg17|chr6 (119338075-119337886)
               

               
               166-355, gnl|loxAfr1|scaffold_160902 (284-103)
               

               
               166-355, gnl|mm7|chr10 (53464628-53464809)
               

               
               166-355, gnl|Mm7|chr10 (53464817-53464628)
               

               
               166-355, gnl|monDom2|scaffold_0 (98108664-98108483)
               

               
               166-355, gnl|oryCun1|scaffold_24758 (2424-2243)
               

               
               166-355, gnl|panTro1|chr5 (121800845-121801026)
               

               
               166-355, gnl|rheMac2|chr4 (145012769-145012588)
               

               
               166-355, gnl|rn3|chr20 (32334227-32334408)
               

               
               166-355, gnl|tetNig1|chr3 (6497879-6498047)
               

               
               166-355, gnl|xenTro1|scaffold_11 (4703190-4703009)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-355, gnl|bosTau2|chr9 (13948303-13948492)
               

               
               166-355, gnl|canFam2|chr1 (61972501-61972682)
               

               
               166-355, gnl|danRer3|chr20 (49143326-49143146)
               

               
               166-355, gnl|dasNov1|scaffold_32772 (5882-6063)
               

               
               166-355, gnl|fr1|chrUn (130958818-130958999)
               

               
               166-355, gnl|galGal2|chr3 (61203811-61203630)
               

               
               166-355, gnl|hg17|chr6 (119337886-119338067)
               

               
               166-355, gnl|Hg17|chr6 (119338075-119337886)
               

               
               166-355, gnl|loxAfr1|scaffold_160902 (284-103)
               

               
               166-355, gnl|mm7|chr10 (53464628-53464809)
               

               
               166-355, gnl|Mm7|chr10 (53464817-53464628)
               

               
               166-355, gnl|monDom2|scaffold_0 (98108664-98108483)
               

               
               166-355, gnl|oryCun1|scaffold_24758 (2424-2243)
               

               
               166-355, gnl|panTro1|chr5 (121800845-121801026)
               

               
               166-355, gnl|rheMac2|chr4 (145012769-145012588)
               

               
               166-355, gnl|rn3|chr20 (32334227-32334408)
               

               
               166-355, gnl|tetNig1|chr3 (6497879-6498047)
               

               
               166-355, gnl|xenTro1|scaffold_11 (4703190-4703009)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	166-355, gnl\|bosTau2\|chr9 (13948303-13948492)
	166-355, gnl\|canFam2\|chr1 (61972501-61972682)
	166-355, gnl\|danRer3\|chr20 (49143326-49143146)
	166-355, gnl\|dasNov1\|scaffold_32772 (5882-6063)
	166-355, gnl\|fr1\|chrUn (130958818-130958999)
	166-355, gnl\|galGal2\|chr3 (61203811-61203630)
	166-355, gnl\|hg17\|chr6 (119337886-119338067)
	166-355, gnl\|Hg17\|chr6 (119338075-119337886)
	166-355, gnl\|loxAfr1\|scaffold_160902 (284-103)
	166-355, gnl\|mm7\|chr10 (53464628-53464809)
	166-355, gnl\|Mm7\|chr10 (53464817-53464628)
	166-355, gnl\|monDom2\|scaffold_0 (98108664-98108483)
	166-355, gnl\|oryCun1\|scaffold_24758 (2424-2243)
	166-355, gnl\|panTro1\|chr5 (121800845-121801026)
	166-355, gnl\|rheMac2\|chr4 (145012769-145012588)
	166-355, gnl\|rn3\|chr20 (32334227-32334408)
	166-355, gnl\|tetNig1\|chr3 (6497879-6498047)
	166-355, gnl\|xenTro1\|scaffold_11 (4703190-4703009)