Non-Coding RNA Search

rhyp13c_j16.y1

Sequence:


               
               GAAGAGGTGTACCTTTGTTGAATGTTGGACCTCGGAGATCTCAGCCCGGTCAGAGAAGAG
AACCCAGGAAGATCATCACAGTCCCAGTAAAAGAAGATGTGCACCTGAAAAAGGCAGAGA
ACGCCTGGAAGCCCAGCCAAAAGCGAGACAGCCAAGCTGAGGATCCCGAAAACATTAAAA
CCCAGGAACTTTTTAGAAAAGTTCGAAGTATCTTAAATAAATTGACACCACAGATGTTCA
ATCAACTGATGAAGCAAGTGTCAGGACTTACTGTTGACACAGAGGAGCGACTGAAAGGAG
TCATTGACCTGGTCTTTGAGAAGGCTATTGACGAACCCAGTTTCTCTGTGGCTTACGCAA
ACATGTGTCGATGTCTAGTAACGCTGAAAGTACCCATGGCAGACAAGCCTGGTAACACAG
TGAATTTCCGGAAGCTGCTACTGAACCGTTGCCAGAAGGAGTTTGAAAAAGATAAAGCTG
ATGATGATGTCTTCGAAAAGAAGCAGAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAGGTGTACCTTTGTTGAATGTTGGACCTCGGAGATCTCAGCCCGGTCAGAGAAGAG
AACCCAGGAAGATCATCACAGTCCCAGTAAAAGAAGATGTGCACCTGAAAAAGGCAGAGA
ACGCCTGGAAGCCCAGCCAAAAGCGAGACAGCCAAGCTGAGGATCCCGAAAACATTAAAA
CCCAGGAACTTTTTAGAAAAGTTCGAAGTATCTTAAATAAATTGACACCACAGATGTTCA
ATCAACTGATGAAGCAAGTGTCAGGACTTACTGTTGACACAGAGGAGCGACTGAAAGGAG
TCATTGACCTGGTCTTTGAGAAGGCTATTGACGAACCCAGTTTCTCTGTGGCTTACGCAA
ACATGTGTCGATGTCTAGTAACGCTGAAAGTACCCATGGCAGACAAGCCTGGTAACACAG
TGAATTTCCGGAAGCTGCTACTGAACCGTTGCCAGAAGGAGTTTGAAAAAGATAAAGCTG
ATGATGATGTCTTCGAAAAGAAGCAGAAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2764589|emb|CAA04500.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2764589|emb|CAA04500.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               184-293, - strand, RNAz p=0.559215
               

               
               266-383, + strand, RNAz p=0.588719

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-293, - strand, RNAz p=0.559215
               

               
               266-383, + strand, RNAz p=0.588719

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               184-383, gnl|bosTau2|chr2 (85502245-85502444)
               

               
               184-383, gnl|canFam2|chr2 (80979290-80979076)
               

               
               184-383, gnl|danRer3|chr23 (30431071-30430861)
               

               
               184-383, gnl|echTel1|scaffold_52944 (794-1008)
               

               
               184-383, gnl|fr1|chrUn (236392926-236392712)
               

               
               184-383, gnl|galGal2|chrUn (86422516-86422726)
               

               
               184-383, gnl|hg17|chr1 (20951118-20951332)
               

               
               184-383, gnl|Hg17|chr1 (20951321-20951122)
               

               
               184-383, gnl|loxAfr1|scaffold_7611 (11439-11225)
               

               
               184-383, gnl|mm7|chr4 (137544377-137544164)
               

               
               184-383, gnl|Mm7|chr4 (137544172-137544371)
               

               
               184-383, gnl|monDom2|scaffold_90 (2315174-2315388)
               

               
               184-383, gnl|oryCun1|scaffold_208867 (956-742)
               

               
               184-383, gnl|panTro1|chr1 (21273164-21273378)
               

               
               184-383, gnl|rheMac2|chr1 (23539855-23540069)
               

               
               184-383, gnl|rn3|chr5 (156948602-156948389)
               

               
               184-383, gnl|tetNig1|chrUn_random (12273031-12273241)
               

               
               184-383, gnl|xenTro1|scaffold_1087 (55331-55117)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-383, gnl|bosTau2|chr2 (85502245-85502444)
               

               
               184-383, gnl|canFam2|chr2 (80979290-80979076)
               

               
               184-383, gnl|danRer3|chr23 (30431071-30430861)
               

               
               184-383, gnl|echTel1|scaffold_52944 (794-1008)
               

               
               184-383, gnl|fr1|chrUn (236392926-236392712)
               

               
               184-383, gnl|galGal2|chrUn (86422516-86422726)
               

               
               184-383, gnl|hg17|chr1 (20951118-20951332)
               

               
               184-383, gnl|Hg17|chr1 (20951321-20951122)
               

               
               184-383, gnl|loxAfr1|scaffold_7611 (11439-11225)
               

               
               184-383, gnl|mm7|chr4 (137544377-137544164)
               

               
               184-383, gnl|Mm7|chr4 (137544172-137544371)
               

               
               184-383, gnl|monDom2|scaffold_90 (2315174-2315388)
               

               
               184-383, gnl|oryCun1|scaffold_208867 (956-742)
               

               
               184-383, gnl|panTro1|chr1 (21273164-21273378)
               

               
               184-383, gnl|rheMac2|chr1 (23539855-23540069)
               

               
               184-383, gnl|rn3|chr5 (156948602-156948389)
               

               
               184-383, gnl|tetNig1|chrUn_random (12273031-12273241)
               

               
               184-383, gnl|xenTro1|scaffold_1087 (55331-55117)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	184-293, - strand, RNAz p=0.559215
	266-383, + strand, RNAz p=0.588719

	184-383, gnl\|bosTau2\|chr2 (85502245-85502444)
	184-383, gnl\|canFam2\|chr2 (80979290-80979076)
	184-383, gnl\|danRer3\|chr23 (30431071-30430861)
	184-383, gnl\|echTel1\|scaffold_52944 (794-1008)
	184-383, gnl\|fr1\|chrUn (236392926-236392712)
	184-383, gnl\|galGal2\|chrUn (86422516-86422726)
	184-383, gnl\|hg17\|chr1 (20951118-20951332)
	184-383, gnl\|Hg17\|chr1 (20951321-20951122)
	184-383, gnl\|loxAfr1\|scaffold_7611 (11439-11225)
	184-383, gnl\|mm7\|chr4 (137544377-137544164)
	184-383, gnl\|Mm7\|chr4 (137544172-137544371)
	184-383, gnl\|monDom2\|scaffold_90 (2315174-2315388)
	184-383, gnl\|oryCun1\|scaffold_208867 (956-742)
	184-383, gnl\|panTro1\|chr1 (21273164-21273378)
	184-383, gnl\|rheMac2\|chr1 (23539855-23540069)
	184-383, gnl\|rn3\|chr5 (156948602-156948389)
	184-383, gnl\|tetNig1\|chrUn_random (12273031-12273241)
	184-383, gnl\|xenTro1\|scaffold_1087 (55331-55117)