Non-Coding RNA Search

rhyp14c_h2.y1

Sequence:


               
               GACGACTGTGCGCCCACCTTCCTCGGGGGCATCGACAGTGCCAGCGCAGTGGTGGAGTTC
AAGCGGAAGGAGGGCACTGTGGTGGCCACGCTGCGTGTCTTCGATGCAGATGTGGTGCCA
GCATCTGGGGAGCTCCTGCGCCGGTACACGAACACACTGCTCTCCAGGGACACCTGGGCC
CTCCAGACCTTCCGAGTAGAGCACTTGCCCAACGAGACCTTGGCCCAGGTCAACGGCAGC
TTTGTGCGGGCCACCATACATGACTACAGGCTGGTTCTCAACCGGAGCCTCTCCATCTTG
GAGAACCGGGCGGTGCAGCTGGCCGTGCTGGTCAACGACTCAGACTTCCAGGGCCCCGGA
GAGGGAGTCCTCCTCCTCCACTTCAATGTGTCCGTGCTGCCCGTCAGCCTGCACCTGCCC
AGCGCCTACTCCTTTGCTGTGAGCAGGCGGGCCCACCGCTTTGCCCAGATGGGGAAAGTC
TGCGTGGAAAACTGCCAGGAGTTCAGTGGCATCCATGTGCAGTACAAGCTGCAGCTCTCC
AACGCCAACTGCAGTGCCCTGGGGATAGTCACCTCGGCTGAGGACACCACGGGGACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGACTGTGCGCCCACCTTCCTCGGGGGCATCGACAGTGCCAGCGCAGTGGTGGAGTTC
AAGCGGAAGGAGGGCACTGTGGTGGCCACGCTGCGTGTCTTCGATGCAGATGTGGTGCCA
GCATCTGGGGAGCTCCTGCGCCGGTACACGAACACACTGCTCTCCAGGGACACCTGGGCC
CTCCAGACCTTCCGAGTAGAGCACTTGCCCAACGAGACCTTGGCCCAGGTCAACGGCAGC
TTTGTGCGGGCCACCATACATGACTACAGGCTGGTTCTCAACCGGAGCCTCTCCATCTTG
GAGAACCGGGCGGTGCAGCTGGCCGTGCTGGTCAACGACTCAGACTTCCAGGGCCCCGGA
GAGGGAGTCCTCCTCCTCCACTTCAATGTGTCCGTGCTGCCCGTCAGCCTGCACCTGCCC
AGCGCCTACTCCTTTGCTGTGAGCAGGCGGGCCCACCGCTTTGCCCAGATGGGGAAAGTC
TGCGTGGAAAACTGCCAGGAGTTCAGTGGCATCCATGTGCAGTACAAGCTGCAGCTCTCC
AACGCCAACTGCAGTGCCCTGGGGATAGTCACCTCGGCTGAGGACACCACGGGGACCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61844679|ref|XP_596682.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61844679|ref|XP_596682.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               71-269, gnl|bosTau2|chr28 (8833277-8833079)
               

               
               71-269, gnl|Hg17|chr10 (42921828-42922026)
               

               
               71-269, gnl|Mm7|chr6 (118204930-118204732)
               


               
               270-471, gnl|bosTau2|chr28 (8831753-8831552)
               

               
               270-471, gnl|Hg17|chr10 (42924486-42924687)
               

               
               270-471, gnl|Mm7|chr6 (118204127-118203923)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-269, gnl|bosTau2|chr28 (8833277-8833079)
               

               
               71-269, gnl|Hg17|chr10 (42921828-42922026)
               

               
               71-269, gnl|Mm7|chr6 (118204930-118204732)
               


               
               270-471, gnl|bosTau2|chr28 (8831753-8831552)
               

               
               270-471, gnl|Hg17|chr10 (42924486-42924687)
               

               
               270-471, gnl|Mm7|chr6 (118204127-118203923)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	71-269, gnl\|bosTau2\|chr28 (8833277-8833079)
	71-269, gnl\|Hg17\|chr10 (42921828-42922026)
	71-269, gnl\|Mm7\|chr6 (118204930-118204732)

	270-471, gnl\|bosTau2\|chr28 (8831753-8831552)
	270-471, gnl\|Hg17\|chr10 (42924486-42924687)
	270-471, gnl\|Mm7\|chr6 (118204127-118203923)